Strain identifier
BacDive ID: 17150
Type strain: 
Species: Propionispora hippei
Strain Designation: KS, KS-SP4I6
Strain history: <- H. Biebl, GBF; KS-SP4I6 <- D. Abou-Zeid {1998}
NCBI tax ID(s): 1123003 (strain), 209080 (species)
version 9.1 (current version)
General
@ref: 5828
BacDive-ID: 17150
DSM-Number: 15287
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, Gram-negative, rod-shaped
description: Propionispora hippei KS is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from sewage treatment plant.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123003 | strain |
| 209080 | species |
strain history
- @ref: 5828
- history: <- H. Biebl, GBF; KS-SP4I6 <- D. Abou-Zeid {1998}
doi: 10.13145/bacdive17150.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Propionispora
- species: Propionispora hippei
- full scientific name: Propionispora hippei Abou-Zeid et al. 2004
@ref: 5828
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Propionispora
species: Propionispora hippei
full scientific name: Propionispora hippei Abou-Zeid et al. 2004
strain designation: KS, KS-SP4I6
type strain: yes
Morphology
cell morphology
- @ref: 30195
- gram stain: negative
- cell shape: rod-shaped
Culture and growth conditions
culture medium
- @ref: 5828
- name: THIOGLYCOLATE MEDIUM (MERCK 108190) (DSMZ Medium 153)
- growth: yes
- link: https://mediadive.dsmz.de/medium/153
- composition: Name: THIOGLYCOLATE MEDIUM (MERCK 108190) (DSMZ Medium 153) Composition: Agar 15.0 g/l (optional) Trypticase 15.0 g/l Yeast extract 5.0 g/l NaCl 2.5 g/l Glucose 2.0 g/l Na-thioglycolate 0.5 g/l L-Cystine 0.5 g/l Resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 5828 | positive | growth | 37 |
| 30195 | positive | growth | 20-50 |
| 30195 | positive | optimum | 37 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30195 | positive | growth | 5-8.5 | alkaliphile |
| 30195 | positive | optimum | 6.8 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5828 | anaerobe |
| 30195 | aerobe |
spore formation
- @ref: 30195
- spore formation: yes
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30195 | 28757 | fructose | + | carbon source |
| 30195 | 17234 | glucose | + | carbon source |
| 30195 | 17754 | glycerol | + | carbon source |
| 30195 | 29864 | mannitol | + | carbon source |
| 30195 | 17151 | xylitol | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 5828
- sample type: sewage treatment plant
- geographic location: Lower Saxony, Gifhorn
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Water treatment plant
taxonmaps
- @ref: 69479
- File name: preview.99_39376.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_208;96_18501;97_22871;98_28816;99_39376&stattab=map
- Last taxonomy: Propionispora hippei subclade
- 16S sequence: AJ508927
- Sequence Identity:
- Total samples: 803
- soil counts: 124
- aquatic counts: 536
- animal counts: 115
- plant counts: 28
Safety information
risk assessment
- @ref: 5828
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5828
- description: Propionispora hippei partial 16S rRNA gene, clone 5
- accession: AJ508927
- length: 1547
- database: nuccore
- NCBI tax ID: 209080
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Propionispora hippei DSM 15287 | GCA_900141835 | scaffold | ncbi | 1123003 |
| 66792 | Propionispora hippei DSM 15287 | 1123003.3 | wgs | patric | 1123003 |
| 66792 | Propionispora hippei DSM 15287 | 2585428088 | draft | img | 1123003 |
GC content
- @ref: 30195
- GC-content: 42.3
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 79.671 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 84.492 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.746 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 75.364 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 89.212 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 76.208 | no |
External links
@ref: 5828
culture collection no.: DSM 15287, ATCC BAA-665
straininfo link
- @ref: 86149
- straininfo: 118517
literature
- topic: Phylogeny
- Pubmed-ID: 15143048
- title: Propionispora hippei sp. nov., a novel Gram-negative, spore-forming anaerobe that produces propionic acid.
- authors: Abou-Zeid DM, Biebl H, Sproer C, Muller RJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.03054-0
- year: 2004
- mesh: Carbon/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phenotype, Phylogeny, Propionates/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Veillonellaceae/*classification/genetics/isolation & purification/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 5828 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15287) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15287 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30195 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26541 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86149 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID118517.1 | StrainInfo: A central database for resolving microbial strain identifiers |