Strain identifier
BacDive ID: 17087
Type strain:
Species: Tsukamurella paurometabola
Strain history: CIP <- 1984, ATCC, Tsukamurella paurometabolum <- E.A. Steinhaus, Corynebacterium paurometabolum
NCBI tax ID(s): 521096 (strain), 2061 (species)
General
@ref: 8586
BacDive-ID: 17087
DSM-Number: 20162
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Tsukamurella paurometabola DSM 20162 is an aerobe, mesophilic, Gram-positive bacterium of the family Tsukamurellaceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
2061 | species |
521096 | strain |
strain history
@ref | history |
---|---|
8586 | <- ATCC <- E.A. Steinhaus |
67770 | CIP 100753 <-- ATCC 8368 <-- E. A. Steinhaus. |
121640 | CIP <- 1984, ATCC, Tsukamurella paurometabolum <- E.A. Steinhaus, Corynebacterium paurometabolum |
doi: 10.13145/bacdive17087.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Tsukamurellaceae
- genus: Tsukamurella
- species: Tsukamurella paurometabola
- full scientific name: Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988
synonyms
@ref synonym 20215 Rhodococcus aurantiacus 20215 Corynebacterium paurometabolum 20215 Tsukamurella paurometabolum
@ref: 8586
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Tsukamurellaceae
genus: Tsukamurella
species: Tsukamurella paurometabola
full scientific name: Tsukamurella paurometabola (Steinhaus 1941) Collins et al. 1988 emend. Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
121640 | positive | rod-shaped | no |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18633 | Cream (9001) | 10-14 days | ISP 2 |
18633 | Colorless | 10-14 days | ISP 3 |
18633 | Cream (9001) | 10-14 days | ISP 4 |
18633 | Cream (9001) | 10-14 days | ISP 5 |
18633 | Cream (9001) | 10-14 days | ISP 6 |
18633 | Cream (9001) | 10-14 days | ISP 7 |
121640 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18633 | no | ISP 2 |
18633 | no | ISP 3 |
18633 | no | ISP 4 |
18633 | no | ISP 5 |
18633 | no | ISP 6 |
18633 | no | ISP 7 |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_20162_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8586 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
18633 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18633 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18633 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18633 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18633 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18633 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
40241 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
121640 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8586 | positive | growth | 28 | mesophilic |
40241 | positive | growth | 30 | mesophilic |
52943 | positive | growth | 30-37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
121640 | positive | growth | 15-37 | |
121640 | no | growth | 10 | psychrophilic |
121640 | no | growth | 41 | thermophilic |
121640 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
52943 | aerobe |
121640 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 95 |
69480 | no | 99.788 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
18633 | NaCl | positive | maximum | 7.5 % |
121640 | NaCl | positive | growth | 0-10 % |
murein
- @ref: 8586
- murein short key: A31
- type: A1gamma m-Dpm-direct
observation
- @ref: 67770
- observation: quinones: MK-9
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18633 | 62968 | cellulose | - | |
18633 | 16634 | raffinose | + | |
18633 | 26546 | rhamnose | + | |
18633 | 28757 | fructose | + | |
18633 | 29864 | mannitol | + | |
18633 | 17268 | myo-inositol | + | |
18633 | 18222 | xylose | + | |
18633 | 17992 | sucrose | + | |
18633 | 22599 | arabinose | + | |
18633 | 17234 | glucose | + | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
121640 | 16947 | citrate | - | carbon source |
121640 | 4853 | esculin | - | hydrolysis |
121640 | 606565 | hippurate | - | hydrolysis |
121640 | 17632 | nitrate | - | reduction |
121640 | 16301 | nitrite | - | reduction |
121640 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 121640
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
121640 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
121640 | 15688 | acetoin | - | ||
121640 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | + | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
121640 | oxidase | + | |
121640 | beta-galactosidase | + | 3.2.1.23 |
121640 | alcohol dehydrogenase | - | 1.1.1.1 |
121640 | gelatinase | +/- | |
121640 | amylase | + | |
121640 | DNase | - | |
121640 | caseinase | - | 3.4.21.50 |
121640 | catalase | + | 1.11.1.6 |
121640 | tween esterase | - | |
121640 | gamma-glutamyltransferase | - | 2.3.2.2 |
121640 | lecithinase | - | |
121640 | lipase | - | |
121640 | lysine decarboxylase | - | 4.1.1.18 |
121640 | ornithine decarboxylase | - | 4.1.1.17 |
121640 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
121640 | protease | - | |
121640 | tryptophan deaminase | - | |
121640 | urease | + | 3.5.1.5 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18633 | - | - | + | + | - | + | + | - | + | + | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18633 | + | - | - | + | + | + | - | - | - | + | - | - | + | - | + | + | - | + | - | |
121640 | - | + | + | - | + | - | - | - | - | + | + | - | - | - | + | + | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18633 | + | + | + | + | + | - | + | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121640 | +/- | - | - | - | +/- | - | - | - | - | +/- | +/- | +/- | - | - | - | - | - | - | - | - | - | +/- | - | - | +/- | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121640 | + | + | + | + | - | - | - | + | - | - | - | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | + | - | + | - | - | - | + | - | + | - | + | - | + | + | - | + | + | - | + | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3845.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1974;97_2373;98_2929;99_3845&stattab=map
- Last taxonomy: Tsukamurella
- 16S sequence: X80628
- Sequence Identity:
- Total samples: 12359
- soil counts: 3431
- aquatic counts: 2978
- animal counts: 5160
- plant counts: 790
Safety information
risk assessment
@ref | biosafety level | biosafety level comment | pathogenicity human |
---|---|---|---|
18633 | 1 | Risk group (German classification) | |
8586 | 1 | Risk group (German classification) | yes, in single cases |
121640 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Tsukamurella paurometabola 16S ribosomal RNA gene, complete sequence | AF283280 | 1510 | ena | 521096 |
20218 | Tsukamurella paurometabola clone F1 16S ribosomal RNA gene, partial sequence | AY262291 | 501 | ena | 521096 |
20218 | Tsukamurella paurometabola DSM 20162 16S ribosomal RNA gene, partial sequence | FJ468341 | 1441 | ena | 521096 |
20218 | Tsukamurella paurometabolum (Corynebacterium p.) partial 16S rRNA | X53206 | 1341 | ena | 521096 |
20218 | Tsukamurella paurometabola 16S rRNA gene, strain DSM20162T | X80628 | 1488 | ena | 521096 |
20218 | T.paurometabola gene for 16S ribosomal RNA | Z46751 | 1474 | ena | 521096 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tsukamurella paurometabola DSM 20162 | GCA_000092225 | complete | ncbi | 521096 |
66792 | Tsukamurella paurometabola DSM 20162 | 521096.6 | complete | patric | 521096 |
66792 | Tsukamurella paurometabola DSM 20162 | 521096.18 | plasmid | patric | 521096 |
66792 | Tsukamurella paurometabola strain NCTC13232 | 2061.4 | wgs | patric | 2061 |
66792 | Tsukamurella paurometabola 33, DSM 20162 | 646564587 | complete | img | 521096 |
66792 | Tsukamurella paurometabola NCTC 13232 | 2856776985 | draft | img | 2061 |
67770 | Tsukamurella paurometabola NCTC13232 | GCA_900460355 | contig | ncbi | 2061 |
GC content
@ref | GC-content | method |
---|---|---|
8586 | 67.0 | |
67770 | 66.6 | thermal denaturation, midpoint method (Tm) |
67770 | 68.4 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 95 | no |
motile | no | 93.34 | no |
flagellated | no | 97.316 | no |
gram-positive | yes | 89.93 | no |
anaerobic | no | 99.72 | yes |
aerobic | yes | 93.438 | yes |
halophile | no | 93.576 | no |
spore-forming | no | 82.754 | no |
thermophile | no | 99.362 | yes |
glucose-util | yes | 92.697 | yes |
glucose-ferment | no | 89.968 | yes |
External links
@ref: 8586
culture collection no.: DSM 20162, ATCC 8368, CECT 3055, CIP 100753, IFO 12160, IFO 16083, IFO 16120, IMET 11082, JCM 10117, NBRC 12160, NBRC 16083, NBRC 16120, CCUG 35730, BCRC 16391, CECT 5333, IFM 0811, JCM 7663, KCTC 9821, NCDO 2349, NCIMB 702349, NCTC 13232
straininfo link
- @ref: 86087
- straininfo: 265217
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8934902 | Tsukamurella pulmonis sp. nov. | Yassin AF, Rainey FA, Brzezinka H, Burghardt J, Rifai M, Seifert P, Feldmann K, Schaal KP | Int J Syst Bacteriol | 10.1099/00207713-46-2-429 | 1996 | Aged, Aged, 80 and over, Bacterial Proteins/analysis, Base Sequence, Cytosine/analysis, DNA, Bacterial/analysis, Female, Guanine/analysis, Humans, Lipids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Mycobacterium/*classification/genetics/ultrastructure, Mycobacterium Infections/*microbiology, Phylogeny, Pneumonia/microbiology, RNA, Ribosomal, 16S/analysis | Pathogenicity |
Phylogeny | 9226890 | Tsukamurella tyrosinosolvens sp. nov. | Yassin AF, Rainey FA, Burghardt J, Brzezinka H, Schmitt S, Seifert P, Zimmermann O, Mauch H, Gierth D, Lux I, Schaal KP | Int J Syst Bacteriol | 10.1099/00207713-47-3-607 | 1997 | Actinomycetales/*classification/*genetics/ultrastructure, Actinomycetales Infections/*microbiology, Bacterial Proteins/analysis, Blood/microbiology, Chromatography, Thin Layer, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Humans, Lipids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny | Pathogenicity |
Enzymology | 31673919 | The actinobacterium Tsukamurella paurometabola has a functionally divergent arylamine N-acetyltransferase (NAT) homolog. | Garefalaki V, Kontomina E, Ioannidis C, Savvidou O, Vagena-Pantoula C, Papavergi MG, Olbasalis I, Patriarcheas D, Fylaktakidou KC, Felfoldi T, Marialigeti K, Fakis G, Boukouvala S | World J Microbiol Biotechnol | 10.1007/s11274-019-2755-1 | 2019 | Actinobacteria/*enzymology/genetics, Amino Acid Sequence, Aminophenols/pharmacology, Aniline Compounds/pharmacology, Arylamine N-Acetyltransferase/classification/drug effects/genetics/*metabolism, Biotransformation, Cloning, Molecular, Enzyme Stability, Gene Expression Regulation, Bacterial, Isoenzymes/genetics, Kinetics, Models, Molecular, Phylogeny, Protein Conformation, Recombinant Proteins/genetics/isolation & purification, Substrate Specificity, Temperature, Xenobiotics | Phylogeny |
Metabolism | 35834592 | A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria. | Kontomina E, Garefalaki V, Fylaktakidou KC, Evmorfidou D, Eleftheraki A, Avramidou M, Udoh K, Panopoulou M, Felfoldi T, Marialigeti K, Fakis G, Boukouvala S | PLoS One | 10.1371/journal.pone.0271125 | 2022 | *Bacteria, Firmicutes, Proteobacteria, Secondary Metabolism, *Xenobiotics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8586 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20162) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20162 | |||
18633 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM20162.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40241 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/12252 | ||||
52943 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 35730) | https://www.ccug.se/strain?id=35730 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
86087 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265217.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121640 | Curators of the CIP | Collection of Institut Pasteur (CIP 100753) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100753 |