Strain identifier

BacDive ID: 17031

Type strain: Yes

Species: Thermoproteus tenax

Strain history: DSM 2078 <-- W. Zillig Kra1.

NCBI tax ID(s): 768679 (strain), 2271 (species)

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General

@ref: 713

BacDive-ID: 17031

DSM-Number: 2078

keywords: genome sequence, 16S sequence, Archaea, anaerobe

description: Thermoproteus tenax DSM 2078 is an anaerobe archaeon that was isolated from mud hole, solfataric field.

NCBI tax id

NCBI tax idMatching level
768679strain
2271species

strain history

@refhistory
713<- W. Zillig, Kra 1
67770DSM 2078 <-- W. Zillig Kra1.

doi: 10.13145/bacdive17031.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/thermoproteota
  • domain: Archaea
  • phylum: Thermoproteota
  • class: Thermoprotei
  • order: Thermoproteales
  • family: Thermoproteaceae
  • genus: Thermoproteus
  • species: Thermoproteus tenax
  • full scientific name: Thermoproteus tenax Zillig and Stetter 1982

@ref: 713

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Thermoproteales

family: Thermoproteaceae

genus: Thermoproteus

species: Thermoproteus tenax

full scientific name: Thermoproteus tenax Zillig and Stetter 1982

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 713
  • name: THERMOPROTEUS MEDIUM (DSMZ Medium 185)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/185
  • composition: Name: THERMOPROTEUS MEDIUM (DSMZ Medium 185) Composition: Sulfur 10.0 g/l Starch 5.0 g/l FeSO4 x 7 H2O 0.556 g/l Na2S x 9 H2O 0.5 g/l MgSO4 x 7 H2O 0.492 g/l CaSO4 x 2 H2O 0.344 g/l (NH4)2SO4 0.264 g/l Yeast extract 0.2 g/l KH2PO4 0.014 g/l Resazurin 0.001 g/l NaF 0.00084 g/l Na2B4O7 x 10 H2O 0.00045 g/l MnCl2 x 4 H2O 0.00018 g/l ZnSO4 x 7 H2O 2.2e-05 g/l CuCl2 x 2 H2O 5e-06 g/l Na2MoO4 x 2 H2O 3e-06 g/l CoSO4 x 7 H2O 1e-06 g/l Distilled water

culture temp

@refgrowthtypetemperature
713positivegrowth85
67770positivegrowth85

Physiology and metabolism

oxygen tolerance

  • @ref: 713
  • oxygen tolerance: anaerobe

observation

  • @ref: 67770
  • observation: quinones: MK-6(H12), MK-5(H10), MK-4(H8), MK-6(H10), MK-5(H8), MK-4(H6), MMK-6(H12), MMK-5(H10)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
713mud hole, solfataric fieldKraftaIcelandISLEurope
67770Acidic solfataric hot springKraflaIcelandISLEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Terrestrial#Volcanic

Safety information

risk assessment

  • @ref: 713
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 713
  • description: T.tenax 16S rRNA
  • accession: M35966.1
  • length: 1504
  • database: nuccore
  • NCBI tax ID: 2271

Genome sequences

  • @ref: 67770
  • description: Thermoproteus tenax Kra 1
  • accession: GCA_000253055
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 768679

GC content

@refGC-contentmethod
71355.5
6777055.9thermal denaturation, midpoint method (Tm)
6777055.3high performance liquid chromatography (HPLC)

External links

@ref: 713

culture collection no.: DSM 2078, ATCC 35583, JCM 9277, Kra 1, NBRC 100435

straininfo link

  • @ref: 86032
  • straininfo: 41172

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology2505050Identification and characterization of the genes encoding three structural proteins of the Thermoproteus tenax virus TTV1.Neumann H, Schwass V, Eckerskorn C, Zillig WMol Gen Genet10.1007/BF003309481989Amino Acid Sequence, Archaea/*genetics, Bacteria/*genetics, Bacteriophages/*genetics, Base Sequence, Binding Sites, Blotting, Northern, Codon, DNA, Viral/isolation & purification, Electrophoresis, Polyacrylamide Gel, *Genes, *Genes, Viral, Molecular Sequence Data, Promoter Regions, Genetic, RNA, Messenger/genetics, RNA, Ribosomal, 16S/metabolism, RNA, Viral/genetics, Restriction Mapping, Viral Proteins/*genetics, Viral Structural ProteinsPhylogeny
Genetics22003381The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, Blombach F, Kletzin A, Kyrpides N, Lanz C, Plagens A, Rampp M, Rosinus A, von Jan M, Makarova KS, Klenk HP, Schuster SC, Hensel RPLoS One10.1371/journal.pone.00242222011Amino Acids/biosynthesis, Chemoautotrophic Growth/genetics, DNA Replication/genetics, Energy Metabolism/genetics, Evolution, Molecular, Genome, Archaeal/*genetics, Genomics, Phylogeny, Protein Biosynthesis/genetics, Protein Transport/genetics, Proton-Motive Force/genetics, Thermoproteus/*genetics/metabolism/*physiology, Transcription, Genetic/geneticsMetabolism
Phylogeny25933622Thermoproteus thermophilus sp. nov., a hyperthermophilic crenarchaeon isolated from solfataric soil.June Yim K, Seon Song H, Choi JS, Woon Roh SInt J Syst Evol Microbiol10.1099/ijs.0.0002932015Base Composition, DNA, Archaeal/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thermoproteus/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
713Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2078)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2078
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
86032Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41172.1StrainInfo: A central database for resolving microbial strain identifiers