Strain identifier

BacDive ID: 17014

Type strain: Yes

Species: Actinoallomurus acaciae

Strain history: BCC 28622 <-- A. Thamchaipenet GMKU 931.

NCBI tax ID(s): 502577 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17311

BacDive-ID: 17014

DSM-Number: 45503

keywords: Gram-positive, mesophilic, spore-forming, aerobe, Bacteria, 16S sequence

description: Actinoallomurus acaciae DSM 45503 is an aerobe, spore-forming, mesophilic Actinobacterium that was isolated from root of wattle tree, Acacia auriculiformis.

NCBI tax id

  • NCBI tax id: 502577
  • Matching level: species

strain history

doi: 10.13145/bacdive17014.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus acaciae
  • full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010

@ref: 17311

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus acaciae

full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 29395
  • gram stain: positive

pigmentation

  • @ref: 29395
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17311
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17311positivegrowth28mesophilic
29395positiveoptimum29mesophilic
67770positivegrowth28mesophilic

culture pH

  • @ref: 29395
  • ability: positive
  • type: optimum
  • pH: 6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29395
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29395
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2939537684mannose+carbon source
2939526546rhamnose+carbon source
2939527082trehalose+carbon source

enzymes

@refvalueactivityec
29395acid phosphatase+3.1.3.2
29395alkaline phosphatase+3.1.3.1
29395catalase+1.11.1.6
29395urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
17311root of wattle tree, Acacia auriculiformisBangkokThailandTHAAsia
67770Root of Acacia auriculiformis A. Cunn. ex Benth. in Kasetsart Univ.BangkokThailandTHAAsiaAcacia auriculiformis

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 17311
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17311
  • description: Actinoallomurus acaciae strain GMKU 931 16S ribosomal RNA gene, partial sequence
  • accession: EU429322
  • length: 1468
  • database: ena
  • NCBI tax ID: 502577

GC content

@refGC-contentmethod
1731170.6
6777070.6high performance liquid chromatography (HPLC)

External links

@ref: 17311

culture collection no.: DSM 45503, BCC 28622, NBRC 104354, NRRL B-24610, GMKU 931, JCM 17235, TBRC 563

straininfo link

@refpassport
20218http://www.straininfo.net/strains/853120
20218http://www.straininfo.net/strains/853121
20218http://www.straininfo.net/strains/853122

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17311Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45503)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45503
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2580210.1099/ijs.0.012237-019654340
29395Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125802
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/