Strain identifier

BacDive ID: 17014

Type strain: Yes

Species: Actinoallomurus acaciae

Strain history: BCC 28622 <-- A. Thamchaipenet GMKU 931.

NCBI tax ID(s): 502577 (species)

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General

@ref: 17311

BacDive-ID: 17014

DSM-Number: 45503

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Actinoallomurus acaciae DSM 45503 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from root of wattle tree, Acacia auriculiformis.

NCBI tax id

  • NCBI tax id: 502577
  • Matching level: species

strain history

@refhistory
17311<- NRRL; NRRL B-24610 <- K. Duangmal; GMKU 931
67770BCC 28622 <-- A. Thamchaipenet GMKU 931.

doi: 10.13145/bacdive17014.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus acaciae
  • full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010

@ref: 17311

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus acaciae

full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 29395
  • gram stain: positive

pigmentation

  • @ref: 29395
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17311GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17311ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
17311positivegrowth28
29395positiveoptimum29
67770positivegrowth28

culture pH

  • @ref: 29395
  • ability: positive
  • type: optimum
  • pH: 6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29395
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29395
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2939537684mannose+carbon source
2939526546rhamnose+carbon source
2939527082trehalose+carbon source

enzymes

@refvalueactivityec
29395acid phosphatase+3.1.3.2
29395alkaline phosphatase+3.1.3.1
29395catalase+1.11.1.6
29395urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
17311root of wattle tree, Acacia auriculiformisBangkokThailandTHAAsia
67770Root of Acacia auriculiformis A. Cunn. ex Benth. in Kasetsart Univ.BangkokThailandTHAAsiaAcacia auriculiformis

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_39292.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_10607;98_13006;99_39292&stattab=map
  • Last taxonomy: Actinoallomurus
  • 16S sequence: EU429322
  • Sequence Identity:
  • Total samples: 1336
  • soil counts: 1187
  • aquatic counts: 70
  • animal counts: 33
  • plant counts: 46

Safety information

risk assessment

  • @ref: 17311
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17311
  • description: Actinoallomurus acaciae strain GMKU 931 16S ribosomal RNA gene, partial sequence
  • accession: EU429322
  • length: 1468
  • database: nuccore
  • NCBI tax ID: 502577

GC content

@refGC-contentmethod
1731170.6
6777070.6high performance liquid chromatography (HPLC)

External links

@ref: 17311

culture collection no.: DSM 45503, BCC 28622, NBRC 104354, NRRL B-24610, GMKU 931, JCM 17235, TBRC 563

straininfo link

  • @ref: 86015
  • straininfo: 397753

literature

  • topic: Phylogeny
  • Pubmed-ID: 19654340
  • title: Actinoallomurus acaciae sp. nov., an endophytic actinomycete isolated from Acacia auriculiformis A. Cunn. ex Benth.
  • authors: Thamchaipenet A, Indananda C, Bunyoo C, Duangmal K, Matsumoto A, Takahashi Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.012237-0
  • year: 2009
  • mesh: Acacia/*microbiology/physiology, Actinobacteria/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology/physiology, RNA, Ribosomal, 16S/genetics, Symbiosis, Thailand
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17311Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45503)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45503
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29395Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2580228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86015Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397753.1StrainInfo: A central database for resolving microbial strain identifiers