Strain identifier
BacDive ID: 17014
Type strain: 
Species: Actinoallomurus acaciae
Strain history: BCC 28622 <-- A. Thamchaipenet GMKU 931.
NCBI tax ID(s): 502577 (species)
version 6 (current version)
General
@ref: 17311
BacDive-ID: 17014
DSM-Number: 45503
keywords: Gram-positive, mesophilic, spore-forming, aerobe, Bacteria, 16S sequence
description: Actinoallomurus acaciae DSM 45503 is an aerobe, spore-forming, mesophilic Actinobacterium that was isolated from root of wattle tree, Acacia auriculiformis.
NCBI tax id
- NCBI tax id: 502577
- Matching level: species
strain history
doi: 10.13145/bacdive17014.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus acaciae
- full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010
@ref: 17311
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus acaciae
full scientific name: Actinoallomurus acaciae Thamchaipenet et al. 2010
type strain: yes
Morphology
cell morphology
- @ref: 29395
- gram stain: positive
pigmentation
- @ref: 29395
- production: yes
Culture and growth conditions
culture medium
- @ref: 17311
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://bacmedia.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17311 | positive | growth | 28 | mesophilic |
| 29395 | positive | optimum | 29 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 29395
- ability: positive
- type: optimum
- pH: 6.5
Physiology and metabolism
oxygen tolerance
- @ref: 29395
- oxygen tolerance: aerobe
spore formation
- @ref: 29395
- spore formation: yes
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29395 | 37684 | mannose | + | carbon source |
| 29395 | 26546 | rhamnose | + | carbon source |
| 29395 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29395 | acid phosphatase | + | 3.1.3.2 |
| 29395 | alkaline phosphatase | + | 3.1.3.1 |
| 29395 | catalase | + | 1.11.1.6 |
| 29395 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|
| 17311 | root of wattle tree, Acacia auriculiformis | Bangkok | Thailand | THA | Asia | |
| 67770 | Root of Acacia auriculiformis A. Cunn. ex Benth. in Kasetsart Univ. | Bangkok | Thailand | THA | Asia | Acacia auriculiformis |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 17311
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17311
- description: Actinoallomurus acaciae strain GMKU 931 16S ribosomal RNA gene, partial sequence
- accession: EU429322
- length: 1468
- database: ena
- NCBI tax ID: 502577
GC content
| @ref | GC-content | method |
|---|---|---|
| 17311 | 70.6 | |
| 67770 | 70.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 17311
culture collection no.: DSM 45503, BCC 28622, NBRC 104354, NRRL B-24610, GMKU 931, JCM 17235, TBRC 563
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/853120 |
| 20218 | http://www.straininfo.net/strains/853121 |
| 20218 | http://www.straininfo.net/strains/853122 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 17311 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45503) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45503 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 25802 | 10.1099/ijs.0.012237-0 | 19654340 | |||||
| 29395 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 25802 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |