Strain identifier

BacDive ID: 17008

Type strain: Yes

Species: Actinoallomurus coprocola

Strain Designation: TT04-09

Strain history: <- NBRC; NBRC 103688 <- T. Tamura; TT04-09

NCBI tax ID(s): 478106 (species)

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General

@ref: 16835

BacDive-ID: 17008

DSM-Number: 45450

keywords: 16S sequence, Bacteria, aerobe, spore-forming, rod-shaped

description: Actinoallomurus coprocola TT04-09 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from cow dung.

NCBI tax id

  • NCBI tax id: 478106
  • Matching level: species

strain history

  • @ref: 16835
  • history: <- NBRC; NBRC 103688 <- T. Tamura; TT04-09

doi: 10.13145/bacdive17008.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus coprocola
  • full scientific name: Actinoallomurus coprocola Tamura et al. 2009

@ref: 16835

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus coprocola

full scientific name: Actinoallomurus coprocola Tamura et al. 2009

strain designation: TT04-09

type strain: yes

Morphology

cell morphology

  • @ref: 29127
  • cell length: 1.1 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29127
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16835GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
16835ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
16835GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16835ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
16835positivegrowth28
29127positivegrowth20-37
29127positiveoptimum28.5

culture pH

@refabilitytypepH
29127positivegrowth05-07
29127positiveoptimum6

Physiology and metabolism

oxygen tolerance

  • @ref: 29127
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29127
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29127NaClpositivegrowth0-3 %
29127NaClpositiveoptimum1.5 %

observation

  • @ref: 29127
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29127168082-dehydro-D-gluconate+carbon source
2912722599arabinose+carbon source
2912718403L-arabitol+carbon source
2912717057cellobiose+carbon source
2912728757fructose+carbon source
2912728260galactose+carbon source
291275417glucosamine+carbon source
2912717234glucose+carbon source
2912728087glycogen+carbon source
2912717716lactose+carbon source
2912725017leucine+carbon source
2912717306maltose+carbon source
2912729864mannitol+carbon source
2912728053melibiose+carbon source
2912717268myo-inositol+carbon source
29127506227N-acetylglucosamine+carbon source
2912716634raffinose+carbon source
2912726546rhamnose+carbon source
2912733942ribose+carbon source
2912717814salicin+carbon source
2912730911sorbitol+carbon source
2912717992sucrose+carbon source
2912727082trehalose+carbon source
2912718222xylose+carbon source
291274853esculin+hydrolysis

enzymes

@refvalueactivityec
29127acid phosphatase+3.1.3.2
29127alpha-galactosidase+3.2.1.22
29127catalase+1.11.1.6
29127gelatinase+
29127pyrazinamidase+3.5.1.B15
29127urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 16835
  • sample type: cow dung
  • geographic location: Futtsu, Chiba
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_17180.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_10607;98_13006;99_17180&stattab=map
  • Last taxonomy: Actinoallomurus
  • 16S sequence: AB364579
  • Sequence Identity:
  • Total samples: 913
  • soil counts: 857
  • aquatic counts: 27
  • animal counts: 14
  • plant counts: 15

Safety information

risk assessment

  • @ref: 16835
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16835
  • description: Actinoallomurus coprocola gene for 16S rRNA, partial sequence, strain: TT04-09 (= NBRC 103688)
  • accession: AB364579
  • length: 1438
  • database: nuccore
  • NCBI tax ID: 478106

GC content

  • @ref: 16835
  • GC-content: 74

External links

@ref: 16835

culture collection no.: DSM 45450, KCTC 19542, NBRC 103688

straininfo link

  • @ref: 86009
  • straininfo: 406298

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19567582Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki KInt J Syst Evol Microbiol10.1099/ijs.0.006858-02009Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytologyGenetics
Phylogeny20418407Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from roots of a Thai jasmine rice plant.Indananda C, Thamchaipenet A, Matsumoto A, Inahashi Y, Duangmal K, Takahashi YInt J Syst Evol Microbiol10.1099/ijs.0.022509-02010Actinomycetales/*classification/genetics/*isolation & purification, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, Phospholipids/analysis, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16835Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45450)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45450
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29127Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2555328776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86009Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406298.1StrainInfo: A central database for resolving microbial strain identifiers