Archive BacDiveID:10.13145/bacdive169770.20230509.8.1

Strain identifier

BacDive ID: 169770

Type strain:

Species: Aminipila terrae

Strain Designation: CBA3637

Strain history: <- S. W. Roh, World Institute of Kimchi, Gwangju, South Korea; CBA3637 <- S. W. Roh

General

@ref: 69192

BacDive-ID: 169770

DSM-Number: 110662

keywords: genome sequence, Bacteria, mesophilic

description: Aminipila terrae CBA3637 is a mesophilic bacterium that was isolated from freshwater sediment.

strain history

@ref: 69192
history: <- S. W. Roh, World Institute of Kimchi, Gwangju, South Korea; CBA3637 <- S. W. Roh

doi: 10.13145/bacdive169770.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Anaerovoracaceae
genus: Aminipila
species: Aminipila terrae
full scientific name: Aminipila terrae Kim et al. 2022

@ref: 69192

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Anaerovoracaceae

genus: Aminipila

species: Aminipila terrae

full scientific name: Aminipila terrae

strain designation: CBA3637

type strain: yes

Culture and growth conditions

culture medium

@ref: 69192
name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
growth: yes
link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104c.pdf

culture temp

@ref: 69192
growth: positive
type: growth
temperature: 30
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 69192
sample type: freshwater sediment
geographic location: Daejeon, Geum River
country: Republic of Korea
origin.country: KOR
continent: Asia

Sequence information

Genome sequences

@ref: 66792
description: Aminipila terrae CBA3637
accession: GCA_010120715
assembly level: complete
database: ncbi
NCBI tax ID: 2697030

GC content

@ref: 69192
GC-content: 36.7
method: sequence analysis

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	yes	86.846	no
flagellated	no	57.892	no
gram-positive	no	77.618	no
anaerobic	yes	99.321	no
aerobic	no	97.637	no
halophile	no	93.922	no
spore-forming	yes	79.711	no
glucose-util	yes	66.876	no
thermophile	no	98.353	yes
glucose-ferment	no	58.713	no

External links

@ref: 69192

culture collection no.: DSM 110662, KACC 21651

straininfo link

@ref: 115911
straininfo: 404744

literature

topic: Phylogeny
Pubmed-ID: 33821299
title: Aminipila terrae sp. nov., a strictly anaerobic bacterium isolated from river sediment.
authors: Kim YB, Kim JY, Kim J, Song HS, Whon TW, Lee SH, Yoo S, Myoung J, Son HS, Roh SW
journal: Arch Microbiol
DOI: 10.1007/s00203-021-02301-x
year: 2021
mesh: Anaerobiosis, Base Composition, *Clostridiales/classification/genetics/isolation & purification, Fatty Acids/analysis, *Geologic Sediments/microbiology, *Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology
topic2: Enzymology

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69192	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-110662	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110662)
115911	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404744.1