Strain identifier
BacDive ID: 169420
Type strain: 
Species: Mycobacterium avium subsp. paratuberculosis
Strain Designation: JIII-386
Strain history: <- P. Moebius, Friedrich-Loeffler-Institut, Jena, Germany; JIII-386 <- G. Luyven, Chemical and Veterinary Laboratories Agency Rhein-Ruhr-Wupper; JIII-386
General
@ref: 68698
BacDive-ID: 169420
DSM-Number: 108962
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Mycobacterium avium subsp. paratuberculosis JIII-386 is a mesophilic human pathogen that was isolated from ileal mucosa, sheep from migrating sheep herd.
strain history
- @ref: 68698
- history: <- P. Moebius, Friedrich-Loeffler-Institut, Jena, Germany; JIII-386 <- G. Luyven, Chemical and Veterinary Laboratories Agency Rhein-Ruhr-Wupper; JIII-386
doi: 10.13145/bacdive169420.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium avium subsp. paratuberculosis
- full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990
synonyms
- @ref: 20215
- synonym: Mycobacterium paratuberculosis
@ref: 68698
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium avium subsp. paratuberculosis
full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990
strain designation: JIII-386
type strain: no
Culture and growth conditions
culture medium
- @ref: 68698
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
culture temp
- @ref: 68698
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 68698
- sample type: ileal mucosa, sheep from migrating sheep herd
- geographic location: North-Rhine-Westphalia
- country: Germany
- origin.country: DEU
- continent: Europe
Safety information
risk assessment
- @ref: 68698
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Mycobacterium avium subsp. paratuberculosis JIII-386
- accession: GCA_002232005
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1770
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.827 | no |
| flagellated | no | 98.827 | no |
| gram-positive | yes | 89.802 | no |
| gram-positive | yes | 89.802 | no |
| anaerobic | no | 99.601 | no |
| anaerobic | no | 99.601 | no |
| aerobic | yes | 90.92 | no |
| aerobic | yes | 90.92 | no |
| halophile | no | 92.594 | no |
| halophile | no | 92.594 | no |
| spore-forming | no | 86.021 | no |
| spore-forming | no | 86.021 | no |
| thermophile | no | 97.045 | yes |
| thermophile | no | 97.045 | yes |
| glucose-util | yes | 64.012 | no |
| glucose-util | yes | 64.012 | no |
| motile | no | 95.388 | no |
| motile | no | 95.388 | no |
| glucose-ferment | no | 92.93 | no |
| glucose-ferment | no | 92.93 | no |
External links
@ref: 68698
culture collection no.: DSM 108962
straininfo link
- @ref: 115639
- straininfo: 406954
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic |
|---|---|---|---|---|---|---|
| 26384038 | Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany. | Mobius P, Holzer M, Felder M, Nordsiek G, Groth M, Kohler H, Reichwald K, Platzer M, Marz M | Genome Biol Evol | 10.1093/gbe/evv154 | 2015 | |
| 33383865 | Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes. | Wibberg D, Price-Carter M, Ruckert C, Blom J, Mobius P | Microorganisms | 10.3390/microorganisms9010070 | 2020 | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68698 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108962 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108962) | |
| 115639 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406954.1 |