Mycobacterium avium subsp. paratuberculosis (DSM 108962, JIII-386)

Name: Mycobacterium avium subsp. paratuberculosis (DSM 108962, JIII-386)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169420

Type strain

Strain Designation JIII-386

Culture col. no. DSM 108962 JIII-386

NCBI tax ID(s) 1770

Special Collections DSMZ

History <- P. Moebius, Friedrich-Loeffler-Institut, Jena, Germany; JIII-386 <- G. Luyven, Chemical and Veterinary Laboratories Agency Rhein-Ruhr-Wupper; JIII-386

Links

Mycobacterium avium subsp. paratuberculosis JIII-386 is a human pathogen that was isolated from ileal mucosa, sheep from migrating sheep herd.

human pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 406954

DSM 108962

@ref 20215

Last LPSN update 2026-02-09 11:41:02

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium avium subsp. paratuberculosis

Full scientific name Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

Synonyms (1)

Mycobacterium paratuberculosis

BacDive ID	Other strains from **Mycobacterium avium subsp. paratuberculosis** (9)	Type strain
8439	M. avium subsp. paratuberculosis DSM 44133, ATCC 19698, TMC 807, CCUG 55483, ... (type strain)
8440	M. avium subsp. paratuberculosis 1351, DSM 44135
135349	M. avium subsp. paratuberculosis JC31, CIP 103964, ATCC 19851, NCTC 8578
135350	M. avium subsp. paratuberculosis CIP 103967, ATCC 43545
135351	M. avium subsp. paratuberculosis CIP 103968, ATCC 49164
135352	M. avium subsp. paratuberculosis 1001, CIP 103971
136665	M. avium subsp. paratuberculosis TB795/95, CIP 107488
136893	M. avium subsp. paratuberculosis CIP 103965, ATCC 43015
137548	M. avium subsp. paratuberculosis 4138, CIP 103978

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68698	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
68698	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
68698	ileal mucosa, sheep from migrating sheep herd	North-Rhine-Westphalia	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
68698			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM223200v2 assembly for Mycobacterium avium subsp. paratuberculosis JIII-386	complete	GCA_002232005	1770.41	1770	70.91

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium avium subsp. paratuberculosis JIII-386
NCBI: GCA_002232005.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.05	no
125438	anaerobic	anaerobicⓘ	no	96.29	no
125438	aerobic	aerobicⓘ	yes	78.57	no
125438	spore-forming	spore-formingⓘ	no	57.70	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes.	Wibberg D, Price-Carter M, Ruckert C, Blom J, Mobius P	Microorganisms	10.3390/microorganisms9010070	2020
	Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany.	Mobius P, Holzer M, Felder M, Nordsiek G, Groth M, Kohler H, Reichwald K, Platzer M, Marz M	Genome Biol Evol	10.1093/gbe/evv154	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68698	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108962
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium avium subsp. paratuberculosis (DSM 108962, JIII-386)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002232005

Genome-based predictions

Predictions

Literature

Literature

References

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