Strain identifier

BacDive ID: 1684

Type strain: No

Species: Bifidobacterium adolescentis

Strain Designation: RU 424 (Mannitol fermenter)

Strain history: DSM 20087 <-- V. Scardovi RU 424.

NCBI tax ID(s): 1410644 (strain), 1680 (species)

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General

@ref: 8513

BacDive-ID: 1684

DSM-Number: 20087

keywords: genome sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Bifidobacterium adolescentis RU 424 is an anaerobe, mesophilic human pathogen that was isolated from bovine rumen.

NCBI tax id

NCBI tax idMatching level
1410644strain
1680species

strain history

@refhistory
8513<- V. Scardovi, RU 424 (Mannitol fermenter)
67770DSM 20087 <-- V. Scardovi RU 424.

doi: 10.13145/bacdive1684.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium adolescentis
  • full scientific name: Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium stercoris

@ref: 8513

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium adolescentis

full scientific name: Bifidobacterium adolescentis Reuter 1963 emend. Nouioui et al. 2018

strain designation: RU 424 (Mannitol fermenter)

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.087
6948099.999positive

Culture and growth conditions

culture medium

  • @ref: 8513
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
8513positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8513anaerobe
69480anaerobe99.523

spore formation

@refspore formationconfidence
69481no100
69480no99.997

murein

  • @ref: 8513
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8513----+++---+++-----+--+--+++-++++---+++--+---------
8513----+++---+++-----+--+--+/-++-++++-+/--+++-+/-+--------+/-

Isolation, sampling and environmental information

isolation

@refsample type
8513bovine rumen
67770Bovine rumen

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Rumen

Safety information

risk assessment

  • @ref: 8513
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium adolescentis DSM 200871410644.3wgspatric1410644
66792Bifidobacterium adolescentis strain LMG 115791680.45wgspatric1680
66792Bifidobacterium adolescentis DSM 200872561511099draftimg1410644
67770Bifidobacterium adolescentis DSM 20087GCA_000702865contigncbi1410644
67770Bifidobacterium adolescentis LMG 11579GCA_002108155contigncbi1680

GC content

  • @ref: 8513
  • GC-content: 60.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.023no
gram-positiveyes92.192no
anaerobicyes98.37yes
halophileno74.658no
spore-formingno95.291no
thermophileno95.074yes
glucose-utilyes84.865no
aerobicno98.392yes
flagellatedno96.453no
glucose-fermentyes81.786no

External links

@ref: 8513

culture collection no.: DSM 20087, JCM 1251, KCTC 3459, LMG 11579

straininfo link

  • @ref: 71331
  • straininfo: 9626

Reference

@idauthorscataloguedoi/urltitle
8513Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20087)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20087
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71331Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9626.1StrainInfo: A central database for resolving microbial strain identifiers