Name: Bifidobacterium adolescentis RU 424 (Mannitol fermenter)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1684

Type strain:

Species: Bifidobacterium adolescentis

Strain Designation: RU 424 (Mannitol fermenter)

Culture col. no.: DSM 20087, JCM 1251, KCTC 3459, LMG 11579

Strain history: DSM 20087 <-- V. Scardovi RU 424.

NCBI tax ID(s): 1410644 (strain), 1680 (species)

SI-ID 9626

LMG 11579, DSM 20087, JCM 1251, KCTC 3459, BCRC 14658, CCRC 14658

Other strains from Bifidobacterium adolescentis

B. adolescentis E194a (Variant a), E194a, DSM 20083, ... (type strain)
B. adolescentis E 298 b (Variant c), DSM 20086, ...
B. adolescentis Eg1, DSM 24849, JCM 15918, KCTC ...
B. adolescentis E319a, CIP 64.61, ATCC 15706, NCDO ...
B. adolescentis CIP 64.58, ATCC 15704, NCDO 2229, ...
B. adolescentis CCUG 45215, CIP 64.60
B. adolescentis CCUG 47519
B. adolescentis CCUG 49594 A
B. adolescentis ORG 4, ORG4, DSM 28529
B. adolescentis ORG 8, ORG8, DSM 28530
B. adolescentis f-BAD, DSM 107523
B. adolescentis H1_9, DSM 108262
B. adolescentis H4_11, DSM 108263
B. adolescentis JCM 19480
B. adolescentis JCM 7045, LMG 18898

Section

Bifidobacterium adolescentis RU 424 is an anaerobe, mesophilic human pathogen that was isolated from bovine rumen.

anaerobe
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium adolescentis**
	Full Scientific Name (LPSN)	Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)

Synonym

Bifidobacterium stercoris

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %91.087

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8513]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8513]

Culture medium growth

[Ref.: #8513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8513]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8513]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #8513]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8513]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.523

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #8513]	Murein short key	A11.31
[Ref.: #8513]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8513]	14970	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	+	-	-	+	-	-	+	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #8513]	14509	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	+	-	-	+	-	-	+/-	+	+	-	+	+	+	+	-	+/-	-	+	+	+	-	+/-	+	-	-	-	-	-	-	-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8513]	Sample type/isolated from	bovine rumen

[Ref.: #67770]	Sample type/isolated from	Bovine rumen
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8513]	Pathogenicity (human)	yes, in single cases
[Ref.: #8513]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium adolescentis DSM 20087	GCA_000702865	contig	GenBank	1410644 tax ID
[Ref.: #67770]	Bifidobacterium adolescentis LMG 11579	GCA_002108155	contig	GenBank	1680 tax ID
[Ref.: #66792]	Bifidobacterium adolescentis DSM 20087	1410644.3	wgs	PATRIC	1410644 tax ID	*
[Ref.: #66792]	Bifidobacterium adolescentis strain LMG 11579	1680.45	wgs	PATRIC	1680 tax ID	*
[Ref.: #66792]	Bifidobacterium adolescentis DSM 20087	2561511099	draft	JGI IMG/M	1410644 tax ID	*

[Ref.: #8513]

GC-content

60.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium adolescentis DSM 20087 PATRIC: 1410644.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium adolescentis DSM 20087 PATRIC: 1410644.3
[Ref.: #69480]	motile	no	94.023	no
[Ref.: #69480]	gram-positive	yes	92.192	no
[Ref.: #69480]	anaerobic	yes	98.37	yes
[Ref.: #69480]	halophile	no	74.658	no
[Ref.: #69480]	spore-forming	no	95.291	no
[Ref.: #69480]	thermophile	no	95.074	yes
[Ref.: #69480]	glucose-util	yes	84.865	no
[Ref.: #69480]	aerobic	no	98.392	yes
[Ref.: #69480]	flagellated	no	96.453	no
[Ref.: #69480]	glucose-ferment	yes	81.786	no

Availability in culture collections External links

[Ref.: #8513]

Culture collection no.

DSM 20087, JCM 1251, KCTC 3459, LMG 11579

[Ref.: #71331]

SI-ID 9626

References

#8513

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20087

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71331

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9626.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium adolescentis DSM 20087

Bifidobacterium adolescentis DSM 20087

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