Strain identifier
BacDive ID: 16837
Type strain: 
Species: Thermoanaerobacter italicus
Strain Designation: Ab9
Strain history: DSM 9252 <-- G. Kozianowski Ab9.
NCBI tax ID(s): 580331 (strain), 108150 (species)
version 8.1 (current version)
General
@ref: 3527
BacDive-ID: 16837
DSM-Number: 9252
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Thermoanaerobacter italicus Ab9 is an anaerobe, thermophilic bacterium that was isolated from mud, thermal spa.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 580331 | strain |
| 108150 | species |
strain history
| @ref | history |
|---|---|
| 3527 | <- G. Kozianowski, Ab9 |
| 67770 | DSM 9252 <-- G. Kozianowski Ab9. |
doi: 10.13145/bacdive16837.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermoanaerobacterales
- family: Thermoanaerobacteraceae
- genus: Thermoanaerobacter
- species: Thermoanaerobacter italicus
- full scientific name: Thermoanaerobacter italicus Kozianowski et al. 1998
@ref: 3527
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Thermoanaerobacteraceae
genus: Thermoanaerobacter
species: Thermoanaerobacter italicus
full scientific name: Thermoanaerobacter italicus Kozianowski et al. 1998
strain designation: Ab9
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3527
- name: THERMOANAEROBACTER (KOKO) MEDIUM (DSMZ Medium 710)
- growth: yes
- link: https://mediadive.dsmz.de/medium/710
- composition: Name: THERMOANAEROBACTER (KoKo) MEDIUM (DSMZ Medium 710) Composition: D-Glucose 4.99002 g/l K2HPO4 1.59681 g/l NaHCO3 0.998004 g/l NaH2PO4 x 2 H2O 0.998004 g/l Yeast extract 0.998004 g/l Peptone 0.998004 g/l Tryptone 0.998004 g/l NH4Cl 0.499002 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgSO4 x 6 H2O 0.159681 g/l CaCl2 x 2 H2O 0.0598802 g/l Na2-EDTA x 2 H2O 0.00518962 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 3527 | positive | growth | 65 | thermophilic |
| 67770 | positive | growth | 65 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 3527
- oxygen tolerance: anaerobe
compound production
- @ref: 3527
- compound: pectate-lyases, thermostable
enzymes
- @ref: 67770
- value: Pectate lyase
- ec: 4.2.2.2
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 3527 | mud, thermal spa | Abano Terme | Italy | ITA | Europe |
| 67770 | Medicinal mud (fango) of Abano Terme | Italy | ITA | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
Safety information
risk assessment
- @ref: 3527
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thermoanaerobacter italicus 16S rRNA gene, strain DSM 9252
- accession: AJ250846
- length: 1480
- database: ena
- NCBI tax ID: 580331
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermoanaerobacter italicus Ab9 | GCA_000025645 | complete | ncbi | 580331 |
| 66792 | Thermoanaerobacter italicus Ab9 | 580331.4 | complete | patric | 580331 |
| 66792 | Thermoanaerobacter italicus Ab9, DSM 9252 | 646564579 | complete | img | 580331 |
GC content
- @ref: 3527
- GC-content: 34.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.012 | no |
| flagellated | no | 87.437 | no |
| gram-positive | no | 71.841 | no |
| anaerobic | yes | 99.571 | no |
| aerobic | no | 99.121 | yes |
| halophile | no | 95.934 | no |
| spore-forming | yes | 93.122 | no |
| thermophile | yes | 100 | no |
| glucose-util | yes | 92.746 | no |
| glucose-ferment | yes | 61.947 | no |
External links
@ref: 3527
culture collection no.: DSM 9252, JCM 16815
straininfo link
- @ref: 85847
- straininfo: 48603
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3527 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9252) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9252 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85847 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48603.1 | StrainInfo: A central database for resolving microbial strain identifiers |