Thermoanaerobacter italicus (DSM 9252, JCM 16815, Ab9)

Name: Thermoanaerobacter italicus (DSM 9252, JCM 16815, Ab9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16837

Type strain

Strain Designation Ab9

Culture col. no. DSM 9252 JCM 16815 Ab9

NCBI tax ID(s) 580331 108150

Special Collections DSMZ JCM

History <- G. Kozianowski, Ab9 DSM 9252 <-- G. Kozianowski Ab9.

Links

Thermoanaerobacter italicus Ab9 is an anaerobe bacterium that was isolated from mud, thermal spa.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48603

DSM 9252,JCM 16815

@ref 20215

Last LPSN update 2026-02-09 11:22:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Thermoanaerobacterales

Family Thermoanaerobacteraceae

Genus Thermoanaerobacter

Species Thermoanaerobacter italicus

Full scientific name Thermoanaerobacter italicus Kozianowski et al. 1998

Synonyms (1)

"Thermoanaerobacter thermocopriae subsp. italicus"

BacDive ID	Other strains from **Thermoanaerobacter italicus** (1)	Type strain
130739	T. italicus Pentocrobe 411, DSM 29083

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3527	THERMOANAEROBACTER (KOKO) MEDIUM (DSMZ Medium 710)		Medium recipe at MediaDive	Name: THERMOANAEROBACTER (KoKo) MEDIUM (DSMZ Medium 710) Composition: D-Glucose 4.99002 g/l K2HPO4 1.59681 g/l NaHCO3 0.998004 g/l NaH2PO4 x 2 H2O 0.998004 g/l Yeast extract 0.998004 g/l Peptone 0.998004 g/l Tryptone 0.998004 g/l NH4Cl 0.499002 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgSO4 x 6 H2O 0.159681 g/l CaCl2 x 2 H2O 0.0598802 g/l Na2-EDTA x 2 H2O 0.00518962 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3527	positive	growth	65
67770	positive	growth	65

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3527	anaerobe
125438	anaerobe	95.755
125439	anaerobe	99.9

Compound production

3527

Compoundpectate-lyases, thermostable

Enzymes

@ref	Value	Ec
67770	Pectate lyase	4.2.2.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3527	mud, thermal spa	Abano Terme	Italy	ITA	Europe
67770	Medicinal mud (fango) of Abano Terme		Italy	ITA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3527	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2564v1 assembly for Thermoanaerobacter italicus Ab9	complete	GCA_000025645	580331.4	646564579	580331	99.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Thermoanaerobacter italicus 16S rRNA gene, strain DSM 9252	AJ250846	1480		580331

GC content

@ref	GC-content (mol%)	Method
3527	34.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermoanaerobacter italicus Ab9
NCBI: GCA_000025645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	64.40	no
125439	motility	BacteriaNetⓘ	yes	74.50	no
125439	gram_stain	BacteriaNetⓘ	variable	79.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermoanaerobacter italicus Ab9 Ab9
NCBI: GCA_000025645.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	60.25	no
125438	anaerobic	anaerobicⓘ	yes	95.76	yes
125438	aerobic	aerobicⓘ	no	98.10	yes
125438	spore-forming	spore-formingⓘ	yes	77.20	no
125438	thermophilic	thermophileⓘ	yes	80.15	yes
125438	flagellated	motile2+ⓘ	yes	74.31	no

Literature

Title	Authors	Journal	DOI	Year
Fermentation of Mannitol Extracts From Brown Macro Algae by Thermophilic Clostridia.	Chades T, Scully SM, Ingvadottir EM, Orlygsson J.	Front Microbiol	10.3389/fmicb.2018.01931	2018

References

#3527	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9252
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thermoanaerobacter italicus (DSM 9252, JCM 16815, Ab9)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000025645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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