Strain identifier
BacDive ID: 16833
Type strain: 
Species: Thermoanaerobacter brockii subsp. finnii
Strain Designation: AKo-1
Strain history: <- S. M. Schoberth and H. Giesel, Kernforschungsanlage Jülich, Institut für Biotechnologie, Jülich, Germany; AKo-1 <- S. M. Schoberth {1982}
NCBI tax ID(s): 509193 (strain), 29325 (subspecies)
version 8.1 (current version)
General
@ref: 1373
BacDive-ID: 16833
DSM-Number: 3389
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, alcohol production
description: Thermoanaerobacter brockii subsp. finnii AKo-1 is an anaerobe, thermophilic bacterium that produces alcohol and was isolated from lake sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 509193 | strain |
| 29325 | subspecies |
strain history
- @ref: 1373
- history: <- S. M. Schoberth and H. Giesel, Kernforschungsanlage Jülich, Institut für Biotechnologie, Jülich, Germany; AKo-1 <- S. M. Schoberth {1982}
doi: 10.13145/bacdive16833.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermoanaerobacterales
- family: Thermoanaerobacteraceae
- genus: Thermoanaerobacter
- species: Thermoanaerobacter brockii subsp. finnii
- full scientific name: Thermoanaerobacter brockii subsp. finnii (Schmid et al. 1986) Cayol et al. 1995
synonyms
- @ref: 20215
- synonym: Thermoanaerobacter finnii
@ref: 1373
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Thermoanaerobacteraceae
genus: Thermoanaerobacter
species: Thermoanaerobacter brockii subsp. finnii
full scientific name: Thermoanaerobacter brockii subsp. finnii (Schmid et al. 1986) Cayol et al. 1995
strain designation: AKo-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1373
- name: THERMOANAEROBACTER BROCKII MEDIUM (DSMZ Medium 144)
- growth: yes
- link: https://mediadive.dsmz.de/medium/144
- composition: Name: THERMOANAEROBACTER BROCKII MEDIUM (DSMZ Medium 144) Composition: Trypticase peptone 10.0 g/l D-Glucose 5.0 g/l Yeast extract 3.0 g/l K2HPO4 1.5 g/l Na2S x 9 H2O 1.0 g/l NH4Cl 0.9 g/l KH2PO4 0.75 g/l MgCl2 x 6 H2O 0.4 g/l Nitrilotriacetic acid 0.1152 g/l NaCl 0.009 g/l FeSO4 x 7 H2O 0.003 g/l FeCl2 x 4 H2O 0.0018 g/l CoCl2 x 6 H2O 0.00153 g/l MnCl2 x 4 H2O 0.0009 g/l CaCl2 x 2 H2O 0.0009 g/l ZnCl2 0.0009 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.00027 g/l Na2SeO3 x 5 H2O 0.00027 g/l CuCl2 0.00018 g/l H3BO3 9e-05 g/l Na2MoO4 x 2 H2O 9e-05 g/l Pyridoxine hydrochloride 5e-05 g/l p-Aminobenzoic acid 2.5e-05 g/l (DL)-alpha-Lipoic acid 2.5e-05 g/l Riboflavin 2.5e-05 g/l Calcium D-(+)-pantothenate 2.5e-05 g/l Thiamine HCl 2.5e-05 g/l Nicotinic acid 2.5e-05 g/l Biotin 1e-05 g/l Folic acid 1e-05 g/l Vitamin B12 5e-07 g/l Distilled water
culture temp
- @ref: 1373
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1373
- oxygen tolerance: anaerobe
compound production
| @ref | compound |
|---|---|
| 1373 | amylase |
| 1373 | ethanol |
| 1373 | pullulanase |
Isolation, sampling and environmental information
isolation
- @ref: 1373
- sample type: lake sediment
- geographic location: Lake Kivu, country of origin unknown
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 1373
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thermoanaerobacter finii (DSM 3389) 16S ribosomal RNA (16S rRNA) gene
- accession: L09166
- length: 1523
- database: ena
- NCBI tax ID: 29325
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermoanaerobacter brockii subsp. finnii Ako-1 | GCA_000175295 | complete | ncbi | 509193 |
| 66792 | Thermoanaerobacter brockii subsp. finnii Ako-1 | 509193.4 | complete | patric | 509193 |
| 66792 | Thermoanaerobacter brockii finnii Ako-1, DSM 3389 | 649633102 | complete | img | 509193 |
GC content
- @ref: 1373
- GC-content: 32.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.337 | no |
| flagellated | no | 89.136 | no |
| gram-positive | no | 61.08 | no |
| anaerobic | yes | 99.23 | yes |
| aerobic | no | 98.297 | yes |
| halophile | no | 92.913 | no |
| spore-forming | yes | 92.958 | no |
| glucose-util | yes | 94.165 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | yes | 59.541 | no |
External links
@ref: 1373
culture collection no.: DSM 3389
straininfo link
- @ref: 85844
- straininfo: 41924
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1373 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3389) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3389 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 85844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41924.1 | StrainInfo: A central database for resolving microbial strain identifiers |