Strain identifier
BacDive ID: 1682
Type strain: 
Species: Bifidobacterium adolescentis
Strain Designation: E194a (Variant a), E194a
Strain history: CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain E194a
NCBI tax ID(s): 367928 (strain), 1680 (species)
version 8.1 (current version)
General
@ref: 8510
BacDive-ID: 1682
DSM-Number: 20083
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Bifidobacterium adolescentis E194a is an anaerobe, mesophilic human pathogen that was isolated from intestine of adult.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 367928 | strain |
| 1680 | species |
strain history
| @ref | history |
|---|---|
| 8510 | <- ATCC <- G. Reuter, E194a (Variant a) |
| 67770 | ATCC 15703 <-- G. Reuter E194a (Variant a). |
| 116048 | CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain E194a |
doi: 10.13145/bacdive1682.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium adolescentis
- full scientific name: Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bifidobacterium stercoris
@ref: 8510
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium adolescentis
full scientific name: Bifidobacterium adolescentis Reuter 1963 emend. Nouioui et al. 2018
strain designation: E194a (Variant a), E194a
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 69480 | no | 90.27 | ||
| 69480 | 100 | positive | ||
| 116048 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 8510 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | yes | https://mediadive.dsmz.de/medium/58 | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water |
| 32787 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
| 116048 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 | |
| 116048 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8510 | positive | growth | 37 | mesophilic |
| 32787 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 8510 | anaerobe | |
| 69480 | anaerobe | 99.686 |
| 116048 | anaerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.988 |
murein
- @ref: 8510
- murein short key: A11.32
- type: A4alpha L-Lys(L-Orn)-D-Asp
metabolite utilization
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | L-arabitol | - | builds acid from | 18403 |
| 68371 | D-arabitol | - | builds acid from | 18333 |
| 68371 | L-fucose | - | builds acid from | 18287 |
| 68371 | D-fucose | - | builds acid from | 28847 |
| 68371 | D-tagatose | - | builds acid from | 16443 |
| 68371 | D-lyxose | - | builds acid from | 62318 |
| 68371 | xylitol | - | builds acid from | 17151 |
| 68371 | glycogen | - | builds acid from | 28087 |
| 68371 | starch | - | builds acid from | 28017 |
| 68371 | raffinose | + | builds acid from | 16634 |
| 68371 | melezitose | - | builds acid from | 6731 |
| 68371 | sucrose | + | builds acid from | 17992 |
| 68371 | melibiose | + | builds acid from | 28053 |
| 68371 | lactose | + | builds acid from | 17716 |
| 68371 | esculin | + | builds acid from | 4853 |
| 68371 | arbutin | + | builds acid from | 18305 |
| 68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
| 68371 | myo-inositol | - | builds acid from | 17268 |
| 68371 | galactitol | - | builds acid from | 16813 |
| 68371 | L-rhamnose | - | builds acid from | 62345 |
| 68371 | D-fructose | + | builds acid from | 15824 |
| 68371 | D-glucose | + | builds acid from | 17634 |
| 68371 | D-galactose | + | builds acid from | 12936 |
| 68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
| 68371 | ribitol | - | builds acid from | 15963 |
| 68371 | L-xylose | - | builds acid from | 65328 |
| 68371 | D-xylose | + | builds acid from | 65327 |
| 68371 | D-ribose | + | builds acid from | 16988 |
| 68371 | L-arabinose | + | builds acid from | 30849 |
| 68371 | D-arabinose | - | builds acid from | 17108 |
| 68371 | erythritol | - | builds acid from | 17113 |
| 68371 | glycerol | - | builds acid from | 17754 |
| 116048 | nitrate | - | reduction | 17632 |
| 116048 | nitrite | - | reduction | 16301 |
metabolite production
- @ref: 116048
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | beta-glucosidase | + | 3.2.1.21 |
| 68382 | alpha-glucosidase | + | 3.2.1.20 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | beta-galactosidase | + | 3.2.1.23 |
| 68382 | alpha-galactosidase | + | 3.2.1.22 |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | |
| 68382 | acid phosphatase | + | 3.1.3.2 |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | valine arylamidase | - | |
| 68382 | leucine arylamidase | + | 3.4.11.1 |
| 68382 | lipase (C 14) | - | |
| 68382 | esterase lipase (C 8) | - | |
| 68382 | esterase (C 4) | - | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 |
| 116048 | oxidase | - | |
| 116048 | catalase | - | 1.11.1.6 |
| 116048 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 65604 C10:0 0.9 10 65604 C12:0 2.6 12 65604 C14:0 10.1 14 65604 C16:0 33.4 16 65604 C18:0 9.7 18 65604 C13:0 3OH/C15:1 i I/H 4.7 14.469 65604 C13:1 at 12-13 1.3 12.931 65604 C16:1 ω9c 2 15.774 65604 C17:0 iso 3OH 1.5 18.161 65604 C18:1 ω9c 17.2 17.769 65604 C18:1 ω9c DMA 12.1 18.226 65604 C18:2 ω6,9c/C18:0 ANTE 3.4 17.724 65604 Unidentified 1.2 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
| @ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116048 | - | - | - | - | - | + | - | - | - | - | + | - | + | + | - | + | + | - | - | - |
API 50CHac
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8510 | - | - | - | - | + | + | + | - | - | - | + | + | + | +/- | +/- | - | - | - | +/- | + | +/- | + | +/- | + | + | + | + | +/- | + | + | + | + | +/- | +/- | - | + | - | - | - | + | + | - | - | - | - | - | - | + | - | - |
| 8510 | - | - | - | - | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | + | + | - | + | + | + | + | - | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
| 8510 | - | - | - | - | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | + | - | - | - | + | + | + | - | + | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 8510 | intestine of adult |
| 67770 | Intestine of adult |
| 116048 | Human, Intestine of adult |
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Gastrointestinal tract
taxonmaps
- @ref: 69479
- File name: preview.99_2430.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_920;97_1072;98_1898;99_2430&stattab=map
- Last taxonomy: Bifidobacterium
- 16S sequence: LC071806
- Sequence Identity:
- Total samples: 97131
- soil counts: 383
- aquatic counts: 2518
- animal counts: 94061
- plant counts: 169
Safety information
risk assessment
| @ref | pathogenicity human | biosafety level | biosafety level comment |
|---|---|---|---|
| 8510 | yes, in single cases | 1 | Risk group (German classification) |
| 116048 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Bifidobacterium adolescentis 16S ribosomal RNA | M58729 | 1477 | ena | 1680 |
| 20218 | Bifidobacterium adolescentis clone nru-1 16S ribosomal RNA gene, partial sequence | AF275881 | 1451 | ena | 1680 |
| 20218 | Bifidobacterium adolescentis clone nru-5 16S ribosomal RNA gene, partial sequence | AF275882 | 1448 | ena | 1680 |
| 20218 | Bifidobacterium adolescentis gene for 16S rRNA, partial sequence, strain: JCM 1275 | AB116269 | 480 | ena | 1680 |
| 20218 | Bifidobacterium adolescentis strain JCM 1275 16S ribosomal RNA gene, partial sequence | GQ227713 | 354 | ena | 1680 |
| 67770 | Bifidobacterium adolescentis gene for 16S ribosomal RNA, partial sequence | AB437354 | 1520 | ena | 1680 |
| 67770 | Bifidobacterium adolescentis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1275 | LC071806 | 1243 | ena | 1680 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium adolescentis ATCC 15703 | GCA_000010425 | complete | ncbi | 367928 |
| 66792 | Bifidobacterium adolescentis ATCC 15703 | 367928.6 | complete | patric | 367928 |
| 66792 | Bifidobacterium adolescentis strain NCTC11814 | 1680.108 | wgs | patric | 1680 |
| 66792 | Bifidobacterium adolescentis ATCC 15703 | 639633010 | complete | img | 367928 |
| 67770 | Bifidobacterium adolescentis NCTC11814 | GCA_900445615 | contig | ncbi | 1680 |
| 66792 | Bifidobacterium adolescentis LMG 10502 | GCA_028743295 | complete | ncbi | 1680 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 8510 | 61.2 | high performance liquid chromatography (HPLC) |
| 8510 | 58.9 | |
| 67770 | 58.9 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 93.082 | no |
| flagellated | no | 95.753 | no |
| gram-positive | yes | 91.901 | no |
| anaerobic | yes | 98.413 | yes |
| halophile | no | 72.906 | no |
| spore-forming | no | 96.22 | no |
| thermophile | no | 92.692 | no |
| glucose-util | yes | 87.218 | no |
| aerobic | no | 98.054 | yes |
| glucose-ferment | yes | 84.637 | no |
External links
@ref: 8510
culture collection no.: DSM 20083, ATCC 15703, CCUG 18363, NCTC 11814, JCM 1275, BCRC 14606, CCM 4987, CCUG 17359, CCUG 45213, CECT 5781, CGMCC 1.2190, CIP 64.59, KCTC 3216, LMG 10502, VTT E-981074, NCDO 2204
straininfo link
- @ref: 71329
- straininfo: 1234
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 9114514 | A new arabinofuranohydrolase from Bifidobacterium adolescentis able to remove arabinosyl residues from double-substituted xylose units in arabinoxylan. | Van Laere KM, Beldman G, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s002530050918 | 1997 | Bifidobacterium/*enzymology, Glycoside Hydrolases/*isolation & purification/metabolism, Magnetic Resonance Spectroscopy, Xylans/*metabolism, Xylose/*metabolism | Enzymology |
| Enzymology | 9871108 | Alpha-galactosidase of Bifidobacterium adolescentis DSM 20083. | Leder S, Hartmeier W, Marx SP | Curr Microbiol | 10.1007/s002849900411 | 1999 | Bifidobacterium/*enzymology, Hydrogen-Ion Concentration, Molecular Weight, Substrate Specificity, Temperature, alpha-Galactosidase/genetics/isolation & purification/*metabolism | Phylogeny |
| Enzymology | 10570815 | Transglycosidase activity of Bifidobacterium adolescentis DSM 20083 alpha-galactosidase. | Van Laere KM, Hartemink R, Beldman G, Pitson S, Dijkema C, Schols HA, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s002530051579 | 1999 | Animals, Bacterial Proteins/chemistry/isolation & purification/*metabolism, Bifidobacterium/*enzymology, Chromatography, Galactosides/metabolism, Humans, Hydrogen-Ion Concentration, Hydrolysis, Magnetic Resonance Spectroscopy, Melibiose/metabolism, Oligosaccharides/biosynthesis/isolation & purification, Swine, Temperature, alpha-Galactosidase/chemistry/isolation & purification/*metabolism | Metabolism |
| Enzymology | 10742215 | Characterization of a novel beta-galactosidase from Bifidobacterium adolescentis DSM 20083 active towards transgalactooligosaccharides. | Van Laere KM, Abee T, Schols HA, Beldman G, Voragen AG | Appl Environ Microbiol | 10.1128/AEM.66.4.1379-1384.2000 | 2000 | Bifidobacterium/*enzymology/growth & development, Culture Media, Galactose, Kinetics, Oligosaccharides/chemistry/*metabolism, Substrate Specificity, beta-Galactosidase/isolation & purification/*metabolism | Cultivation |
| Pathogenicity | 12406706 | Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress. | Amor KB, Breeuwer P, Verbaarschot P, Rombouts FM, Akkermans AD, De Vos WM, Abee T | Appl Environ Microbiol | 10.1128/AEM.68.11.5209-5216.2002 | 2002 | Bifidobacterium/cytology/*drug effects/enzymology/physiology, Bile Acids and Salts/*pharmacology, Cell Membrane Permeability/drug effects, Cell Separation, Esterases/metabolism, Flow Cytometry/*methods, Membrane Potentials/drug effects, Probiotics | Stress |
| Enzymology | 12658515 | Cloning and characterization of two alpha-glucosidases from Bifidobacterium adolescentis DSM20083. | van den Broek LA, Struijs K, Verdoes JC, Beldman G, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s00253-002-1179-1 | 2003 | Amino Acid Sequence, Bifidobacterium/classification/*enzymology, Cloning, Molecular, Glucosides/metabolism, Glycosylation, Hymecromone/*analogs & derivatives/metabolism, Molecular Sequence Data, Recombinant Proteins/analysis, Sequence Alignment, Substrate Specificity, alpha-Amylases/analysis/genetics, alpha-Glucosidases/*analysis/chemistry/*genetics/isolation & purification | Phylogeny |
| Enzymology | 14740189 | Physico-chemical and transglucosylation properties of recombinant sucrose phosphorylase from Bifidobacterium adolescentis DSM20083. | van den Broek LA, van Boxtel EL, Kievit RP, Verhoef R, Beldman G, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s00253-003-1534-x | 2004 | Bifidobacterium/*enzymology/genetics/growth & development, Cloning, Molecular, Escherichia coli/genetics, Genomic Library, Glucosyltransferases/*chemistry/genetics/metabolism, Molecular Sequence Data, Recombinant Proteins/chemistry/metabolism | Metabolism |
| Metabolism | 15480628 | beta-galactosidase from Bifidobacterium adolescentis DSM20083 prefers beta(1,4)-galactosides over lactose. | Hinz SW, van den Brock LA, Beldman G, Vincken JP, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s00253-004-1745-9 | 2004 | Amino Acid Sequence, Bifidobacterium, Galactosides/*metabolism, Lactose/*metabolism, Molecular Sequence Data, Substrate Specificity, beta-Galactosidase/genetics/isolation & purification/*metabolism | Genetics |
| Enzymology | 15650848 | Cloning and characterization of arabinoxylan arabinofuranohydrolase-D3 (AXHd3) from Bifidobacterium adolescentis DSM20083. | van den Broek LA, Lloyd RM, Beldman G, Verdoes JC, McCleary BV, Voragen AG | Appl Microbiol Biotechnol | 10.1007/s00253-004-1850-9 | 2005 | Arabinose/metabolism, Aspergillus niger/enzymology, Bifidobacterium/*enzymology/genetics, Carboxylesterase/genetics, *Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Endo-1,4-beta Xylanases/genetics, Escherichia coli/genetics, Gene Expression, Glycoside Hydrolases/*genetics/metabolism, Molecular Sequence Data, Open Reading Frames, Recombinant Proteins/genetics/metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Substrate Specificity, Trichoderma/enzymology | Metabolism |
| Metabolism | 16320365 | Increasing the transglycosylation activity of alpha-galactosidase from Bifidobacterium adolescentis DSM 20083 by site-directed mutagenesis. | Hinz SW, Doeswijk-Voragen CH, Schipperus R, van den Broek LA, Vincken JP, Voragen AG | Biotechnol Bioeng | 10.1002/bit.20713 | 2006 | *Amino Acid Substitution, Bacterial Proteins/genetics/*metabolism, Bifidobacterium/*enzymology/genetics, Catalytic Domain/genetics, Glycosylation, Hydrogen-Ion Concentration, Melibiose/*biosynthesis, Mutagenesis, Site-Directed, *Point Mutation, Protein Structure, Tertiary, Structure-Activity Relationship, Substrate Specificity/genetics, alpha-Galactosidase/genetics/*metabolism | Enzymology |
| Metabolism | 16672507 | Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut. | Belenguer A, Duncan SH, Calder AG, Holtrop G, Louis P, Lobley GE, Flint HJ | Appl Environ Microbiol | 10.1128/AEM.72.5.3593-3599.2006 | 2006 | Acetates/metabolism, Bacteria, Anaerobic/growth & development/*metabolism, Bifidobacterium/growth & development/*metabolism, Butyrates/*metabolism, Culture Media, Digestive System/*microbiology, Ecosystem, Fatty Acids/metabolism, Fructose, Humans, Lactates/metabolism, Oligosaccharides/metabolism | Cultivation |
| Metabolism | 18642926 | Assessment on the fermentability of xylooligosaccharides from rice husks by probiotic bacteria. | Gullon P, Moura P, Esteves MP, Girio FM, Dominguez H, Parajo JC | J Agric Food Chem | 10.1021/jf800715b | 2008 | Bifidobacterium/growth & development/*metabolism, *Fermentation, Oligosaccharides/*metabolism, Oryza/*chemistry, Probiotics/*metabolism, Xylans/*metabolism | |
| 19004868 | Improvement of bacterial transformation efficiency using plasmid artificial modification. | Yasui K, Kano Y, Tanaka K, Watanabe K, Shimizu-Kadota M, Yoshikawa H, Suzuki T | Nucleic Acids Res | 10.1093/nar/gkn884 | 2008 | Bifidobacterium/genetics, DNA Modification Methylases/genetics, Escherichia coli/genetics, Genetic Vectors, Plasmids/*genetics, *Transformation, Bacterial | ||
| Phylogeny | 19502759 | Intra-species diversity between seven Bifidobacterium adolescentis strains identified by genome-wide tiling array analysis. | Yasui K, Tabata M, Yamada S, Abe T, Ikemura T, Osawa R, Suzuki T | Biosci Biotechnol Biochem | 10.1271/bbb.80843 | 2009 | Bifidobacterium/*classification/genetics, *Genome, Bacterial, Oligonucleotide Array Sequence Analysis, Species Specificity | Genetics |
| Metabolism | 19694435 | In vitro fermentation of arabinoxylan-derived carbohydrates by bifidobacteria and mixed fecal microbiota. | Pastell H, Westermann P, Meyer AS, Tuomainen P, Tenkanen M | J Agric Food Chem | 10.1021/jf901397b | 2009 | Arabinose/metabolism, Bifidobacterium/genetics/growth & development/*metabolism, DNA, Bacterial/analysis, Feces/*microbiology, *Fermentation, Humans, Hydrogen-Ion Concentration, Oligosaccharides/*metabolism, Species Specificity, Xylans/*metabolism, Xylose/metabolism | Pathogenicity |
| Phylogeny | 20081020 | Bifidobacterium stercoris sp. nov., isolated from human faeces. | Kim MS, Roh SW, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.019943-0 | 2010 | Adult, Aldehyde-Lyases/metabolism, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Chaperonin 60/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, Male, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
| 20380746 | Characterization of recombinant beta-fructofuranosidase from Bifidobacterium adolescentis G1. | Omori T, Ueno K, Muramatsu K, Kikuchi M, Onodera S, Shiomi N | Chem Cent J | 10.1186/1752-153X-4-9 | 2010 | |||
| Metabolism | 21317917 | Celiac disease in patients with type 1 diabetes: a condition with distinct changes in intestinal immunity? | Uibo R, Panarina M, Teesalu K, Talja I, Sepp E, Utt M, Mikelsaar M, Heilman K, Uibo O, Vorobjova T | Cell Mol Immunol | 10.1038/cmi.2010.66 | 2011 | Adolescent, Animals, Antibodies, Bacterial/immunology, Bacterial Proteins/immunology, Bifidobacterium/immunology, Cattle, Celiac Disease/*complications/*immunology/microbiology/pathology, Child, Child, Preschool, Diabetes Mellitus, Type 1/*complications/*immunology/microbiology/pathology, Female, Forkhead Transcription Factors/genetics/metabolism, GTP-Binding Proteins/genetics/metabolism, Gene Expression Regulation, Gliadin/immunology, Humans, Immunity/*immunology, Immunoglobulin A/immunology, Immunoglobulin G/immunology, Infant, Intestinal Mucosa/enzymology/pathology, Intestines/*immunology/*pathology, Lactoglobulins/immunology, Male, Membrane Proteins/genetics/metabolism, Phosphoproteins/genetics/metabolism, Protein Glutamine gamma Glutamyltransferase 2, RNA, Messenger/genetics/metabolism, Transglutaminases/genetics/metabolism, Zonula Occludens-1 Protein | Pathogenicity |
| Metabolism | 21815100 | Plasmid artificial modification: a novel method for efficient DNA transfer into bacteria. | Suzuki T, Yasui K | Methods Mol Biol | 10.1007/978-1-61779-197-0_18 | 2011 | Bifidobacterium/*genetics, DNA Modification Methylases/genetics/*metabolism, DNA, Bacterial/*genetics, Electroporation, Escherichia coli/cytology/*genetics, Genetic Vectors/*genetics, Plasmids/*genetics, *Transformation, Bacterial | |
| Enzymology | 22534302 | Cloning and characterization of ginsenoside Ra1-hydrolyzing beta-D-xylosidase from Bifidobacterium breve K-110. | Hyun YJ, Kim B, Kim DH | J Microbiol Biotechnol | 10.4014/jmb.1110.10001 | 2012 | Amino Acid Sequence, Bacterial Proteins/*chemistry/*genetics/metabolism, Base Sequence, Bifidobacterium/chemistry/*enzymology/genetics/isolation & purification, *Cloning, Molecular, Feces/microbiology, Ginsenosides/*metabolism, Humans, Kinetics, Molecular Sequence Data, Molecular Weight, Xylosidases/*chemistry/*genetics/metabolism | Metabolism |
| Genetics | 22639142 | A targeted gene knockout method using a newly constructed temperature-sensitive plasmid mediated homologous recombination in Bifidobacterium longum. | Sakaguchi K, He J, Tani S, Kano Y, Suzuki T | Appl Microbiol Biotechnol | 10.1007/s00253-012-4090-4 | 2012 | Bacterial Proteins/genetics, Bifidobacterium/*genetics, DNA Replication, Gene Knockout Techniques/*methods, Genes, Bacterial, Genetic Vectors, Homologous Recombination, Mutation, Missense, Plasmids, Temperature | |
| Metabolism | 23822770 | Xylooligosaccharides from hardwood and cereal xylans produced by a thermostable xylanase as carbon sources for Lactobacillus brevis and Bifidobacterium adolescentis. | Falck P, Precha-Atsawanan S, Grey C, Immerzeel P, Stalbrand H, Adlercreutz P, Karlsson EN | J Agric Food Chem | 10.1021/jf401249g | 2013 | Bacterial Proteins/*chemistry, Betula/*chemistry/metabolism, Bifidobacterium/growth & development/*metabolism, Biocatalysis, Carbon/chemistry/metabolism, Endo-1,4-beta Xylanases/*chemistry, Enzyme Stability, Glucuronates/chemistry/*metabolism, Hydrolysis, Lactobacillus brevis/growth & development/*metabolism, Oligosaccharides/chemistry/*metabolism, Prebiotics/analysis, Rhodothermus/*enzymology, Secale/*chemistry/metabolism, Wood/chemistry/metabolism, Xylans/*chemistry/metabolism | Enzymology |
| Metabolism | 23924734 | Motif-guided identification of a glycoside hydrolase family 1 alpha-L-arabinofuranosidase in Bifidobacterium adolescentis. | Suzuki H, Murakami A, Yoshida K | Biosci Biotechnol Biochem | 10.1271/bbb.130279 | 2013 | Amino Acid Motifs/*genetics, Bifidobacterium/*enzymology, Genome, Bacterial, Glycoside Hydrolases/chemistry/*metabolism, Glycosides/metabolism, Hydrolysis, Protein Structure, Tertiary, Substrate Specificity, Xylans/metabolism | Genetics |
| Phylogeny | 24187022 | Reclassification of Bifidobacterium stercoris Kim et al. 2010 as a later heterotypic synonym of Bifidobacterium adolescentis. | Killer J, Sedlacek I, Rada V, Havlik J, Kopecny J | Int J Syst Evol Microbiol | 10.1099/ijs.0.054957-0 | 2013 | Aldehyde-Lyases/genetics, Bacterial Typing Techniques, Bifidobacterium/*classification/genetics, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Peptide Elongation Factor G/genetics, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ribosomal Proteins/genetics, Sequence Analysis, DNA | Genetics |
| Pathogenicity | 24741589 | Antibodies to Lactobacilli and Bifidobacteria in young children with different propensity to develop islet autoimmunity. | Talja I, Kubo AL, Veijola R, Knip M, Simell O, Ilonen J, Vaha-Makila M, Sepp E, Mikelsaar M, Utt M, Uibo R | J Immunol Res | 10.1155/2014/325938 | 2014 | Antibodies, Bacterial/*immunology, *Autoimmunity, Bacterial Proteins/immunology, Bifidobacterium/*immunology, Child, Child, Preschool, Diabetes Mellitus, Type 1/immunology, Female, Humans, Immunoglobulin A/immunology, Immunoglobulin G/immunology, Immunoglobulin M/immunology, Intestines/immunology/microbiology, Islets of Langerhans/*immunology, Lactobacillus/*immunology, Male | |
| Phylogeny | 24944342 | Bifidobacterium faecale sp. nov., isolated from human faeces. | Choi JH, Lee KM, Lee MK, Cha CJ, Kim GB | Int J Syst Evol Microbiol | 10.1099/ijs.0.063479-0 | 2014 | Aldehyde-Lyases/metabolism, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Chaperonin 60/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, Infant, Newborn, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
| Pathogenicity | 25794720 | Enzymatic production of HMO mimics by the sialylation of galacto-oligosaccharides. | Wang Y, Jiang K, Ma H, Zeng W, Wang PG, Yao N, Han W, Cheng J, Wang W | Food Chem | 10.1016/j.foodchem.2015.02.064 | 2015 | Health Maintenance Organizations, Humans, Milk, Human, Oligosaccharides/*chemistry, Polysaccharides/*chemistry, Prebiotics | Biotechnology |
| Metabolism | 26297820 | Biochemical identification of the catalytic residues of a glycoside hydrolase family 120 beta-xylosidase, involved in xylooligosaccharide metabolisation by gut bacteria. | Cecchini DA, Faure R, Laville E, Potocki-Veronese G | FEBS Lett | 10.1016/j.febslet.2015.08.012 | 2015 | Bacterial Proteins/chemistry/genetics/*metabolism, Bifidobacterium/genetics/*metabolism, Binding Sites/genetics, Catalytic Domain, Glucuronates/chemistry/*metabolism, Humans, Hydrogen-Ion Concentration, Hydrolysis, Intestines/microbiology, Kinetics, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Structure, Mutation, Oligosaccharides/chemistry/*metabolism, Protein Structure, Tertiary, Substrate Specificity, Xylosidases/chemistry/genetics/*metabolism | Pathogenicity |
| Metabolism | 27692648 | Development of stable isotope dilution assays for the quantitation of intra- and extracellular folate patterns of Bifidobacterium adolescentis. | Kopp M, Durr K, Steigleder M, Clavel T, Rychlik M | J Chromatogr A | 10.1016/j.chroma.2016.09.048 | 2016 | Bifidobacterium adolescentis/*metabolism, Biological Assay, Chromatography, Liquid, Deuterium, Folic Acid/analogs & derivatives/metabolism, Indicator Dilution Techniques, Reproducibility of Results, Tandem Mass Spectrometry, Tetrahydrofolates/*metabolism | Proteome |
| 28377750 | Measurements of Intra- and Extra-Cellular 5-Methyltetrahydrofolate Indicate that Bifidobacterium Adolescentis DSM 20083(T) and Bifidobacterium Pseudocatenulatum DSM 20438(T) Do Not Actively Excrete 5-Methyltetrahydrofolate In vitro. | Kopp M, Durr K, Steigleder M, Clavel T, Rychlik M | Front Microbiol | 10.3389/fmicb.2017.00445 | 2017 | |||
| Pathogenicity | 28432676 | Bifidobacterium adolescentis (DSM 20083) and Lactobacillus casei (Lafti L26-DSL): Probiotics Able to Block the In Vitro Adherence of Rotavirus in MA104 Cells. | Fernandez-Duarte KP, Olaya-Galan NN, Salas-Cardenas SP, Lopez-Rozo J, Gutierrez-Fernandez MF | Probiotics Antimicrob Proteins | 10.1007/s12602-017-9277-7 | 2018 | Antiviral Agents/*pharmacology, Bifidobacterium adolescentis/*physiology, Cell Line, Gastroenteritis/prevention & control/virology, Humans, Lactobacillus casei/chemistry/*physiology, Probiotics/*pharmacology, Rotavirus/*drug effects/physiology, Rotavirus Infections/prevention & control/*virology, Virus Attachment/*drug effects | |
| Metabolism | 29337072 | Valorization of Brewer's spent grain to prebiotic oligosaccharide: Production, xylanase catalyzed hydrolysis, in-vitro evaluation with probiotic strains and in a batch human fecal fermentation model. | Sajib M, Falck P, Sardari RRR, Mathew S, Grey C, Karlsson EN, Adlercreutz P | J Biotechnol | 10.1016/j.jbiotec.2018.01.005 | 2018 | Batch Cell Culture Techniques/*methods, *Beer, *Biocatalysis, Chromatography, Ion Exchange, Endo-1,4-beta Xylanases/*metabolism, Fatty Acids/metabolism, Feces/chemistry, Fermentation/*drug effects, Gases/metabolism, Hordeum, Humans, Hydrogen-Ion Concentration, Hydrolysis, Models, Biological, Oligosaccharides/*pharmacology, *Prebiotics, Probiotics/*pharmacology, Waste Products, Xylans/isolation & purification | Pathogenicity |
| 29633635 | Prophylactic Bifidobacterium adolescentis ATTCC 15703 supplementation reduces partially allergic airway disease in Balb/c but not in C57BL/6 mice. | Casaro MC, Crisma AR, Vieira AT, Silva GHM, Mendes E, Ribeiro WR, Martins FS, Ferreira CM | Benef Microbes | 10.3920/BM2017.0073 | 2018 | Administration, Oral, Animals, Asthma/*prevention & control, Bifidobacterium adolescentis/*growth & development, Disease Models, Animal, Eosinophils/immunology, Mice, Inbred BALB C, Mice, Inbred C57BL, Probiotics/*administration & dosage, Respiratory System/*pathology, Treatment Outcome | ||
| 29881432 | Promoting Probiotics Survival by Microencapsualtion with Hylon Starch and Genipin Cross-linked Coatings in Simulated Gastro-intestinal Condition and Heat Treatment. | Khosravi Zanjani MA, Ehsani MR, Ghiassi Tarzi B, Sharifan A | Iran J Pharm Res | 2018 | ||||
| Pathogenicity | 30465831 | Polysaccharide fractions from Fortunella margarita affect proliferation of Bifidobacterium adolescentis ATCC 15703 and undergo structural changes following fermentation. | Chen P, You Q, Li X, Chang Q, Zhang Y, Zheng B, Hu X, Zeng H | Int J Biol Macromol | 10.1016/j.ijbiomac.2018.11.163 | 2018 | Bifidobacterium adolescentis/drug effects/*growth & development, Fatty Acids/biosynthesis, Fermentation/*drug effects, Hydrogen-Ion Concentration, Lactic Acid/biosynthesis, Molecular Conformation, Molecular Weight, Polysaccharides/*chemistry/metabolism/*pharmacology, Rutaceae/*chemistry | Metabolism |
| Metabolism | 30890726 | Estimation of microbial phosphate-accumulation abilities. | Anand A, Aoyagi H | Sci Rep | 10.1038/s41598-018-37752-8 | 2019 | Bifidobacterium adolescentis/*drug effects/metabolism, Cell-Free System, Gastrointestinal Microbiome/drug effects, Humans, Hyperphosphatemia/drug therapy/*metabolism/pathology, Lactobacillus casei/*drug effects/metabolism, Phosphate-Binding Proteins/metabolism, Phosphates/adverse effects/*metabolism, Probiotics/isolation & purification/metabolism, Renal Dialysis/adverse effects | Pathogenicity |
| Enzymology | 31134431 | A quantitative model of Bacillus cereus ATCC 9634 growth inhibition by bifidobacteria for synbiotic effect evaluation. | Karetkin BA, Guseva EV, Evdokimova SA, Mishchenko AS, Khabibulina NV, Grosheva VD, Menshutina NV, Panfilov VI | World J Microbiol Biotechnol | 10.1007/s11274-019-2665-2 | 2019 | Acetic Acid, Antibiosis, Bacillus cereus/drug effects/*growth & development, Bacteriocins/isolation & purification, Bifidobacterium/*physiology, Coculture Techniques, Fatty Acids, Volatile/pharmacology, Fermentation, Food Contamination, Hydrogen-Ion Concentration, Inulin, Kinetics, Lactic Acid, Microbial Sensitivity Tests, Prebiotics, Probiotics, Propionates, *Synbiotics | Pathogenicity |
| Transcriptome | 31762999 | Combining of transcriptome and metabolome analyses for understanding the utilization and metabolic pathways of Xylo-oligosaccharide in Bifidobacterium adolescentis ATCC 15703. | Yang J, Tang Q, Xu L, Li Z, Ma Y, Yao D | Food Sci Nutr | 10.1002/fsn3.1194 | 2019 | ||
| Phylogeny | 31792245 | A High Throughput Isolation Method for Phosphate-Accumulating Organisms. | Anand A, Aoyagi H | Sci Rep | 10.1038/s41598-019-53429-2 | 2019 | Bifidobacterium adolescentis/isolation & purification/*metabolism, Cell Culture Techniques, Centrifugation, Density Gradient, Humans, Hyperphosphatemia/metabolism/therapy, Lactobacillus casei/isolation & purification/*metabolism, Phosphates/isolation & purification/*metabolism, Probiotics/isolation & purification/*metabolism | Metabolism |
| 34354509 | Characterization of a GH36 beta-L-Arabinopyranosidase in Bifidobacterium adolescentis. | Sasaki Y, Togo N, Kitahara K, Fujita K | J Appl Glycosci (1999) | 10.5458/jag.jag.JAG-2018_001 | 2018 | |||
| 35464910 | Study on the Biochemical Characterization and Selectivity of Three beta-Glucosidases From Bifidobacterium adolescentis ATCC15703. | Hu Y, Zhai L, Hong H, Shi Z, Zhao J, Liu D | Front Microbiol | 10.3389/fmicb.2022.860014 | 2022 | |||
| 35630373 | A Study and Modeling of Bifidobacterium and Bacillus Coculture Continuous Fermentation under Distal Intestine Simulated Conditions. | Evdokimova SA, Karetkin BA, Guseva EV, Gordienko MG, Khabibulina NV, Panfilov VI, Menshutina NV, Gradova NB | Microorganisms | 10.3390/microorganisms10050929 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8510 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20083 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 32787 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10164 | ||||
| 65604 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 18363) | https://www.ccug.se/strain?id=18363 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 68371 | Automatically annotated from API 50CH acid | |||||
| 68382 | Automatically annotated from API zym | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71329 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1234.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 116048 | Curators of the CIP | Collection of Institut Pasteur (CIP 64.59) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2064.59 |