Bifidobacterium adolescentis (DSM 20083, ATCC 15703, CCUG 18363)

Name: Bifidobacterium adolescentis (DSM 20083, ATCC 15703, CCUG 18363)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1682

Type strain

Strain Designation E194a (Variant a), E194a

Culture col. no. DSM 20083 ATCC 15703 CCUG 18363 NCTC 11814 E194a (Variant a) 13 more

NCBI tax ID(s) 367928 1680

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC <- G. Reuter, E194a (Variant a) ATCC 15703 <-- G. Reuter E194a (Variant a). CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain E194a

Links

Bifidobacterium adolescentis E194a is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from intestine of adult.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1234

LMG 10502,ATCC 15703,CCUG 17359,CCUG 18363,DSM 20083,JCM 1275,LMG 11036,LMG 11037,NCFB 2204,NCTC 11814,CCUG 45213,NCDO 2204,CCRC 14606,NCIMB 702204,KCTC 3216,AS 1.2190,CCM 4987,CECT 5781,NCAIM B.01822,BCRC 14606,CGMCC 1.2190,VTT E-981074,VTT E-001750,CIP 64.59

@ref 20215

Last LPSN update 2025-12-16 09:47:09

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium adolescentis

Full scientific name Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)

Synonyms (2)

Bifidobacterium stercoris
Bifidobacterium faecale

BacDive ID	Other strains from **Bifidobacterium adolescentis** (15)	Type strain
1683	B. adolescentis E 298 b (Variant c), DSM 20086, ATCC 15705, ...
1684	B. adolescentis RU 424 (Mannitol fermenter), DSM 20087, JCM ...
1748	B. adolescentis Eg1, DSM 24849, JCM 15918, KCTC 5756, BCRC ...
137496	B. adolescentis E319a, CIP 64.61, ATCC 15706, NCDO 2231, ...
138910	B. adolescentis CIP 64.58, ATCC 15704, NCDO 2229, CCUG 45214, ...
151924	B. adolescentis CCUG 45215, CIP 64.60
152740	B. adolescentis CCUG 47519
153440	B. adolescentis CCUG 49594 A
157629	B. adolescentis ORG 4, ORG4, DSM 28529
157630	B. adolescentis ORG 8, ORG8, DSM 28530
157631	B. adolescentis f-BAD, DSM 107523
157632	B. adolescentis H1_9, DSM 108262
157633	B. adolescentis H4_11, DSM 108263
162521	B. adolescentis JCM 19480
165468	B. adolescentis JCM 7045, LMG 18898

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116048	positive	rod-shaped
125438				93

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8510	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
32787	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116048	CIP Medium 20	Medium recipe at CIP
116048	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8510	positive	growth	37	mesophilic
32787	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8510	anaerobe
116048	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.96
125439		96.9

Murein

@ref	Murein short key	Type
8510	A11.32	A4alpha L-Lys(L-Orn)-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
116048	17632 ChEBI	nitrate	-	reduction
116048	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116048	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116048	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116048	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116048	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	vitamin B1 metabolism	100	13 of 13
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	photosynthesis	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	isoleucine metabolism	75	6 of 8
66794	coenzyme A metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	serine metabolism	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	purine metabolism	61.7	58 of 94
66794	lipoate biosynthesis	60	3 of 5
66794	pyrimidine metabolism	57.78	26 of 45
66794	methionine metabolism	57.69	15 of 26
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	oxidative phosphorylation	57.14	52 of 91
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	leucine metabolism	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	citric acid cycle	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	isoprenoid biosynthesis	50	13 of 26
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	non-pathway related	47.37	18 of 38
66794	flavin biosynthesis	46.67	7 of 15
66794	metabolism of disaccharids	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	lysine metabolism	42.86	18 of 42
66794	tyrosine metabolism	42.86	6 of 14
66794	lipid metabolism	41.94	13 of 31
66794	arginine metabolism	41.67	10 of 24
66794	glycine metabolism	40	4 of 10
66794	Entner Doudoroff pathway	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	glutathione metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	formaldehyde oxidation	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	lipid A biosynthesis	33.33	3 of 9
66794	propionate fermentation	30	3 of 10
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

65604

Fatty acid	Percentage	ECL
C16:0	33.4	16
C18:1 ω9c	17.2	17.769
C18:1 ω9c DMA	12.1	18.226
C14:0	10.1	14
C18:0	9.7	18
C13:0 3OH/C15:1 i I/H	4.7	14.469
C18:2 ω6,9c/C18:0 ANTE	3.4	17.724
C12:0	2.6	12
C16:1 ω9c	2	15.774
C17:0 iso 3OH	1.5	18.161
C13:1 at 12-13	1.3	12.931
Unidentified	1.2
C10:0	0.9	10

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116048	-	-	-	-	-	+	-	-	-	-	+	-	+	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8510	-	-	-	-	+	+	+	-	-	-	+	+	+	+/-	+/-	-	-	-	+/-	+	+/-	+	+/-	+	+	+	+	+/-	+	+	+	+	+/-	+/-	-	+	-	-	-	+	+	-	-	-	-	-	-	+	-	-
8510	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	+	+	+	+	-	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-
8510	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	+	+	+	-	+	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host Body-Site	#Gastrointestinal tract

Isolation

@ref	Sample type
8510	intestine of adult
67770	Intestine of adult
116048	Human, Intestine of adult

Taxonmaps

69479

Global distribution of 16S sequence LC071806 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	2518
Soil Samples	383
Animal Samples	94061
Plant Samples	169
Total Samples	97131

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
8510	yes, in single cases	1	Risk group (German classification) According to TRBA 466
116048		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2874329v1 assembly for Bifidobacterium adolescentis LMG 10502	complete	GCA_028743295	1680.2363	8117071606	1680	99.25
66792	ASM1042v1 assembly for Bifidobacterium adolescentis ATCC 15703	complete	GCA_000010425	367928.6	639633010	367928	98.53
67770	49964_F01 assembly for Bifidobacterium adolescentis NCTC11814	contig	GCA_900445615	1680.108	8025283844	1680	62.72

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium adolescentis 16S ribosomal RNA	M58729	1477	1680
20218	Bifidobacterium adolescentis gene for 16S rRNA, partial sequence, strain: JCM 1275	AB116269	480	1680
20218	Bifidobacterium adolescentis strain JCM 1275 16S ribosomal RNA gene, partial sequence	GQ227713	354	1680
67770	Bifidobacterium adolescentis gene for 16S ribosomal RNA, partial sequence	AB437354	1520	1680
67770	Bifidobacterium adolescentis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1275	LC071806	1243	1680

GC content

@ref	GC-content (mol%)	Method
8510	61.2	high performance liquid chromatography (HPLC)
8510	58.9
67770	58.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium adolescentis ATCC 15703
PATRIC: 367928.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	yes	53.70	no
125439	gram_stain	BacteriaNetⓘ	positive	65.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	84.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium adolescentis ATCC 15703 ATCC 15703
NCBI: GCA_000010425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.78	no
125438	anaerobic	anaerobicⓘ	yes	87.56	no
125438	aerobic	aerobicⓘ	no	92.89	no
125438	spore-forming	spore-formingⓘ	no	90.96	no
125438	thermophilic	thermophileⓘ	no	93.60	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Crystal structure of the sucrose phosphorylase from Alteromonas mediterranea shows a loop transition in the active site.	Fredslund F, Goux M, Offmann B, Demonceaux M, Andre-Miral C, Welner D, Teze D.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x25004327	2025
	Highly efficient CRISPR-Cas9 base editing in Bifidobacterium with bypass of restriction modification systems.	Lin H-C, Hsiao W-C, Hsu Y-C, Lin M-C, Hsu C-C, Zhang MM.	Appl Environ Microbiol	10.1128/aem.01985-24	2025
	Advancements in the Heterologous Expression of Sucrose Phosphorylase and Its Molecular Modification for the Synthesis of Glycosylated Products.	Zhang H, Zhu L, Zhou Z, Wang D, Yang J, Wang S, Lou T.	Molecules	10.3390/molecules29174086	2024
	Bifidobacterium adolescentis is resistant to pyrazinamide, isoniazid, and streptomycin.	Nellikka A, Cheruvari A, Vasu P, Mutturi S, Rajagopal K.	Sci Rep	10.1038/s41598-024-78095-x	2024
	Characterizing the Effect of Amylase Inhibitors on Maltodextrin Metabolism by Gut Bacteria Using Fluorescent Glycan Labeling.	Lui O, Dridi L, Gonzalez E, Yasmine S, Kubinski R, Billings H, Bohlmann J, Withers SG, Maurice C, Castagner B.	ACS Chem Biol	10.1021/acschembio.2c00791	2023
	SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics.	Zhang B, Feng S, Parajuli M, Xiong Y, Pan C, Guo X.	Bioinform Res Appl	10.1007/978-981-97-5087-0_9	2024
Genetics	Complete genome sequence of Bifidobacterium adolescentis P2P3, a human gut bacterium possessing strong resistant starch-degrading activity.	Jung DH, Chung WH, Seo DH, Kim YJ, Nam YD, Park CS.	3 Biotech	10.1007/s13205-019-2019-7	2020
	Origin of fecal contamination in lettuce and strawberries: From microbial indicators, molecular markers, and H. pylori.	Vesga FJ, Venegas C, Florez Martinez V, Sanchez-Alfonso AC, Trespalacios AA.	Heliyon	10.1016/j.heliyon.2024.e36526	2024
Metabolism	Prevalent Human Gut Bacteria Hydrolyse and Metabolise Important Food-Derived Mycotoxins and Masked Mycotoxins.	Daud N, Currie V, Duncan G, Farquharson F, Yoshinari T, Louis P, Gratz S.	Toxins (Basel)	10.3390/toxins12100654	2020
Metabolism	Roles of human colonic bacteria in pectin utilization and associated cross-feeding networks revealed using synthetic co-cultures.	Solvang M, Farquharson FM, Horgan G, Pisano S, Holck J, Zeuner B, Russell WR, Louis P.	Microbiology (Reading)	10.1099/mic.0.001559	2025
Enzymology	GH36 alpha-galactosidase from Lactobacillus plantarum WCFS1 synthesize Gal-alpha-1,6 linked prebiotic alpha-galactooligosaccharide by transglycosylation.	Panwar D, Shubhashini A, Chaudhari SR, Prashanth KVH, Kapoor M.	Int J Biol Macromol	10.1016/j.ijbiomac.2019.12.032	2020
Metabolism	Bifidobacterium adolescentis is intrinsically resistant to antitubercular drugs.	Lokesh D, Parkesh R, Kammara R.	Sci Rep	10.1038/s41598-018-30429-2	2018
Pathogenicity	Quantifying the varying harvest of fermentation products from the human gut microbiota.	Arnoldini M, Sharma R, Moresi C, Chure G, Chabbey J, Slack E, Cremer J.	Cell	10.1016/j.cell.2025.07.005	2025
	Bifid Shape Is Intrinsic to Bifidobacterium adolescentis.	Dhanashree, Rajashekharan S, Krishnaswamy B, Kammara R.	Front Microbiol	10.3389/fmicb.2017.00478	2017
Metabolism	Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-alpha-glucosylglycerol.	Schwaiger KN, Cserjan-Puschmann M, Striedner G, Nidetzky B.	Microb Cell Fact	10.1186/s12934-021-01569-4	2021
Genetics	The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.	Larnder AH, Manges AR, Murphy RA.	Int J Cancer	10.1002/ijc.35427	2025
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Enzymology	Cloning, purification, and characterization of GH3 beta-glucosidase, MtBgl85, from Microbulbifer thermotolerans DAU221.	Pyeon HM, Lee YS, Choi YL.	PeerJ	10.7717/peerj.7106	2019
Metabolism	Arabinoxylan and Pectin Metabolism in Crohn's Disease Microbiota: An In Silico Study.	Sabater C, Calvete-Torre I, Ruiz L, Margolles A.	Int J Mol Sci	10.3390/ijms23137093	2022
	Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis (BiBga42A) revealed by crystallographic and mutational analyses.	Gotoh A, Hidaka M, Sakurama H, Nishimoto M, Kitaoka M, Sakanaka M, Fushinobu S, Katayama T.	Microbiome Res Rep	10.20517/mrr.2023.14	2023
	Determining the metabolic fate of human milk oligosaccharides: it may just be more complex than you think?	Jackson PPJ, Wijeyesekera A, Rastall RA.	Gut Microbiome (Camb)	10.1017/gmb.2022.8	2022
	Entrapment, survival and release of Bifidobacterium adolescentis within chickpea protein-based microcapsules	Wang J, Korber DR, Low NH, Nickerson MT.	Food Res Int	10.1016/j.foodres.2013.09.018	2014
Phylogeny	Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach.	Duranti S, Turroni F, Milani C, Foroni E, Bottacini F, Dal Bello F, Ferrarini A, Delledonne M, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02467-12	2013
	Polysaccharide Derived from Nelumbo nucifera Lotus Plumule Shows Potential Prebiotic Activity and Ameliorates Insulin Resistance in HepG2 Cells.	Le B, Anh PT, Yang SH.	Polymers (Basel)	10.3390/polym13111780	2021
	Analytical Performance Characteristics of a New Transcription-Mediated Amplification Assay for Treponema pallidum.	Getman D, Lin M, Barakat N, Skvoretz R, Godornes C, Swenson P, Nenninger A, Golden MR, Lukehart SA.	J Clin Microbiol	10.1128/jcm.00511-21	2021
Metabolism	Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities.	Hettich RL, Pan C, Chourey K, Giannone RJ.	Anal Chem	10.1021/ac303053e	2013
	Extraction of water-soluble xylan from wheat bran and utilization of enzymatically produced xylooligosaccharides by Lactobacillus, Bifidobacterium and Weissella spp.	Immerzeel P, Falck P, Galbe M, Adlercreutz P, Nordberg Karlsson E, Stalbrand H.	Lebensm Wiss Technol	10.1016/j.lwt.2013.12.013	2014
Genetics	MINTIA: a metagenomic INserT integrated assembly and annotation tool.	Bardou P, Laguerre S, Maman Haddad S, Legoueix Rodriguez S, Laville E, Dumon C, Potocki-Veronese G, Klopp C.	PeerJ	10.7717/peerj.11885	2021
	Identification of gut microbes-related molecular subtypes and their biomarkers in colorectal cancer.	Liu X, Zhang G, Li S, Liu Y, Ma K, Wang L.	Aging (Albany NY)	10.18632/aging.205480	2024
	Complete Genome Sequence of the Probiotic Bifidobacterium thermophilum Strain RBL67.	Jans C, Lacroix C, Follador R, Stevens MJ.	Genome Announc	10.1128/genomea.00191-13	2013
	Host-bacteriome transplants of the schistosome snail host Biomphalaria glabrata reflect species-specific associations.	Schols R, Vanoverberghe I, Huyse T, Decaestecker E.	FEMS Microbiol Ecol	10.1093/femsec/fiad101	2023
	Species Deletions from Microbiome Consortia Reveal Key Metabolic Interactions between Gut Microbes.	Gutierrez N, Garrido D.	mSystems	10.1128/msystems.00185-19	2019
	Association between Gut Microbiota and Development of Gestational Diabetes Mellitus.	Sililas P, Huang L, Thonusin C, Luewan S, Chattipakorn N, Chattipakorn S, Tongsong T.	Microorganisms	10.3390/microorganisms9081686	2021
	Biochemical and kinetic characterisation of a novel xylooligosaccharide-upregulated GH43 beta-d-xylosidase/alpha-l-arabinofuranosidase (BXA43) from the probiotic Bifidobacterium animalis subsp. lactis BB-12.	Viborg AH, Sorensen KI, Gilad O, Steen-Jensen DB, Dilokpimol A, Jacobsen S, Svensson B.	AMB Express	10.1186/2191-0855-3-56	2013
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	Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis.	Thissen JB, Be NA, McLoughlin K, Gardner S, Rack PG, Shapero MH, Rowland RRR, Slezak T, Jaing CJ.	PLoS One	10.1371/journal.pone.0212045	2019
	Prebiotics from Seaweeds: An Ocean of Opportunity?	Cherry P, Yadav S, Strain CR, Allsopp PJ, McSorley EM, Ross RP, Stanton C.	Mar Drugs	10.3390/md17060327	2019
Genetics	Bifidobacterium bifidum: A Key Member of the Early Human Gut Microbiota.	Turroni F, Duranti S, Milani C, Lugli GA, van Sinderen D, Ventura M.	Microorganisms	10.3390/microorganisms7110544	2019
Phylogeny	Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.	Lugli GA, Mancino W, Milani C, Duranti S, Mancabelli L, Napoli S, Mangifesta M, Viappiani A, Anzalone R, Longhi G, van Sinderen D, Ventura M, Turroni F.	Appl Environ Microbiol	10.1128/aem.02806-18	2019
Phylogeny	Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.	Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02004-14	2014
	Enzymatic Adaptation of Bifidobacterium bifidum to Host Glycans, Viewed from Glycoside Hydrolyases and Carbohydrate-Binding Modules.	Katoh T, Ojima MN, Sakanaka M, Ashida H, Gotoh A, Katayama T.	Microorganisms	10.3390/microorganisms8040481	2020
Enzymology	Genetic diversity of bile salt hydrolases among human intestinal bifidobacteria.	Jarocki P, Targonski Z.	Curr Microbiol	10.1007/s00284-013-0362-1	2013
Pathogenicity	In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications.	Krumbeck JA, Maldonado-Gomez MX, Martinez I, Frese SA, Burkey TE, Rasineni K, Ramer-Tait AE, Harris EN, Hutkins RW, Walter J.	Appl Environ Microbiol	10.1128/aem.03903-14	2015
Metabolism	Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.	Duranti S, Turroni F, Lugli GA, Milani C, Viappiani A, Mangifesta M, Gioiosa L, Palanza P, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.01993-14	2014
Pathogenicity	Commensal Bacteria Impact a Protozoan's Integration into the Murine Gut Microbiota in a Dietary Nutrient-Dependent Manner.	Wei Y, Gao J, Kou Y, Meng L, Zheng X, Liang M, Sun H, Liu Z, Wang Y.	Appl Environ Microbiol	10.1128/aem.00303-20	2020
	Body Mass Index and Sex Affect Diverse Microbial Niches within the Gut.	Borgo F, Garbossa S, Riva A, Severgnini M, Luigiano C, Benetti A, Pontiroli AE, Morace G, Borghi E.	Front Microbiol	10.3389/fmicb.2018.00213	2018
Enzymology	Evaluation of a Novel Stool Antigen Rapid Test Kit for Detection of Helicobacter pylori Infection.	Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M.	J Clin Microbiol	10.1128/jcm.01825-18	2019
	Bifidobacterium animalis subsp. lactis decreases urinary oxalate excretion in a mouse model of primary hyperoxaluria.	Klimesova K, Whittamore JM, Hatch M.	Urolithiasis	10.1007/s00240-014-0728-2	2015
Phylogeny	Gene encoding the CTP synthetase as an appropriate molecular tool for identification and phylogenetic study of the family Bifidobacteriaceae.	Killer J, Mekadim C, Pechar R, Bunesova V, Mrazek J, Vlkova E.	Microbiologyopen	10.1002/mbo3.579	2018
Phylogeny	Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.	Brandt K, Barrangou R.	Front Microbiol	10.3389/fmicb.2016.00657	2016
	Co-production of schizophyllan and arabinoxylan from corn fiber.	Leathers TD, Nunnally MS, Price NP.	Biotechnol Lett	10.1007/s10529-006-0028-1	2006
	Shaping the Infant Microbiome With Non-digestible Carbohydrates.	Verkhnyatskaya S, Ferrari M, de Vos P, Walvoort MTC.	Front Microbiol	10.3389/fmicb.2019.00343	2019
	Comparison of the sensitivity of commercial strains and infant isolates of bifidobacteria to antibiotics and bacteriocins	Kheadr E, Bernoussi N, Lacroix C, Fliss I.	Int Dairy J	10.1016/j.idairyj.2004.04.010	2004
Metabolism	Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria.	Cecchini DA, Laville E, Laguerre S, Robe P, Leclerc M, Dore J, Henrissat B, Remaud-Simeon M, Monsan P, Potocki-Veronese G.	PLoS One	10.1371/journal.pone.0072766	2013
	Impact of Probiotic Bacteria on Respiratory Allergy Disorders.	Jakubczyk D, Gorska S.	Front Microbiol	10.3389/fmicb.2021.688137	2021
Genetics	Genome-wide identification of small RNAs in Bifidobacterium animalis subsp. lactis KLDS 2.0603 and their regulation role in the adaption to gastrointestinal environment.	Zhu DQ, Liu F, Sun Y, Yang LM, Xin L, Meng XC.	PLoS One	10.1371/journal.pone.0117373	2015
Metabolism	Relevance of Bifidobacterium animalis subsp. lactis plasminogen binding activity in the human gastrointestinal microenvironment.	Candela M, Turroni S, Centanni M, Fiori J, Bergmann S, Hammerschmidt S, Brigidi P.	Appl Environ Microbiol	10.1128/aem.00413-11	2011
	A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health.	Hatch A, Horne J, Toma R, Twibell BL, Somerville KM, Pelle B, Canfield KP, Genkin M, Banavar G, Perlina A, Messier H, Klitgord N, Vuyisich M.	Int J Genomics	10.1155/2019/1718741	2019
Metabolism	The Glycoside Hydrolase Family 8 Reducing-End Xylose-Releasing Exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 Is Active on Branched Xylooligosaccharides.	Valenzuela SV, Lopez S, Biely P, Sanz-Aparicio J, Pastor FI.	Appl Environ Microbiol	10.1128/aem.01329-16	2016
Genetics	Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.	Kim JF, Jeong H, Yu DS, Choi SH, Hur CG, Park MS, Yoon SH, Kim DW, Ji GE, Park HS, Oh TK.	J Bacteriol	10.1128/jb.01515-08	2009
	Prebiotic potential of Agave angustifolia Haw fructans with different degrees of polymerization.	Velazquez-Martinez JR, Gonzalez-Cervantes RM, Hernandez-Gallegos MA, Mendiola RC, Aparicio AR, Ocampo ML.	Molecules	10.3390/molecules190812660	2014
Genetics	Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut.	Lugli GA, Mancino W, Milani C, Duranti S, Turroni F, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.00796-18	2018
Metabolism	Recombinant expression and characterization of a reducing-end xylose-releasing exo-oligoxylanase from Bifidobacterium adolescentis.	Lagaert S, Van Campenhout S, Pollet A, Bourgois TM, Delcour JA, Courtin CM, Volckaert G.	Appl Environ Microbiol	10.1128/aem.00722-07	2007
Metabolism	A Novel Multifunctional Arabinofuranosidase/Endoxylanase/beta-Xylosidase GH43 Enzyme from Paenibacillus curdlanolyticus B-6 and Its Synergistic Action To Produce Arabinose and Xylose from Cereal Arabinoxylan.	Limsakul P, Phitsuwan P, Waeonukul R, Pason P, Tachaapaikoon C, Poomputsa K, Kosugi A, Ratanakhanokchai K.	Appl Environ Microbiol	10.1128/aem.01730-21	2021
Pathogenicity	In Vitro and In Vivo Activities of DS86760016, a Novel Leucyl-tRNA Synthetase Inhibitor for Gram-Negative Pathogens.	Purnapatre KP, Rao M, Pandya M, Khanna A, Chaira T, Bambal R, Upadhyay DJ, Masuda N.	Antimicrob Agents Chemother	10.1128/aac.01987-17	2018
Metabolism	An in vitro intestinal platform with a self-sustaining oxygen gradient to study the human gut/microbiome interface.	Kim R, Attayek PJ, Wang Y, Furtado KL, Tamayo R, Sims CE, Allbritton NL.	Biofabrication	10.1088/1758-5090/ab446e	2019
Pathogenicity	The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions.	Vazquez-Gutierrez P, Stevens MJ, Gehrig P, Barkow-Oesterreicher S, Lacroix C, Chassard C.	BMC Genomics	10.1186/s12864-016-3472-x	2017
Phylogeny	Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.	Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.	BMC Microbiol	10.1186/1471-2180-13-149	2013
Metabolism	Glycan complexity dictates microbial resource allocation in the large intestine.	Rogowski A, Briggs JA, Mortimer JC, Tryfona T, Terrapon N, Lowe EC, Basle A, Morland C, Day AM, Zheng H, Rogers TE, Thompson P, Hawkins AR, Yadav MP, Henrissat B, Martens EC, Dupree P, Gilbert HJ, Bolam DN.	Nat Commun	10.1038/ncomms8481	2015
Pathogenicity	Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut.	Duranti S, Longhi G, Ventura M, van Sinderen D, Turroni F.	Microorganisms	10.3390/microorganisms9010008	2020
	Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor.	Alam MT, Takano E, Breitling R.	BMC Res Notes	10.1186/1756-0500-4-325	2011
Enzymology	Expression and characterization of a Bifidobacterium adolescentis beta-mannanase carrying mannan-binding and cell association motifs.	Kulcinskaja E, Rosengren A, Ibrahim R, Kolenova K, Stalbrand H.	Appl Environ Microbiol	10.1128/aem.02118-12	2013
	Prebiotic Potential and Chemical Composition of Seven Culinary Spice Extracts.	Lu QY, Summanen PH, Lee RP, Huang J, Henning SM, Heber D, Finegold SM, Li Z.	J Food Sci	10.1111/1750-3841.13792	2017
Pathogenicity	Probiotic Bifidobacterium strains and galactooligosaccharides improve intestinal barrier function in obese adults but show no synergism when used together as synbiotics.	Krumbeck JA, Rasmussen HE, Hutkins RW, Clarke J, Shawron K, Keshavarzian A, Walter J.	Microbiome	10.1186/s40168-018-0494-4	2018
Phylogeny	Probiotics in Food Systems: Significance and Emerging Strategies Towards Improved Viability and Delivery of Enhanced Beneficial Value.	Terpou A, Papadaki A, Lappa IK, Kachrimanidou V, Bosnea LA, Kopsahelis N.	Nutrients	10.3390/nu11071591	2019
Genetics	Technological advances in bifidobacterial molecular genetics: application to functional genomics and medical treatments.	Fukiya S, Hirayama Y, Sakanaka M, Kano Y, Yokota A.	Biosci Microbiota Food Health	10.12938/bmfh.31.15	2012
	Mechanism of Cooperative Degradation of Gum Arabic Arabinogalactan Protein by Bifidobacterium longum Surface Enzymes.	Sasaki Y, Komeno M, Ishiwata A, Horigome A, Odamaki T, Xiao JZ, Tanaka K, Ito Y, Kitahara K, Ashida H, Fujita K.	Appl Environ Microbiol	10.1128/aem.02187-21	2022
	Commensal Obligate Anaerobic Bacteria and Health: Production, Storage, and Delivery Strategies.	Andrade JC, Almeida D, Domingos M, Seabra CL, Machado D, Freitas AC, Gomes AM.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00550	2020
	Gut Microbiota Dysbiosis Associated With Altered Production of Short Chain Fatty Acids in Children With Neurodevelopmental Disorders.	Bojovic K, Ignjatovic DI, Sokovic Bajic S, Vojnovic Milutinovic D, Tomic M, Golic N, Tolinacki M.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00223	2020
Enzymology	A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space.	Michelini S, Balakrishnan B, Parolo S, Matone A, Mullaney JA, Young W, Gasser O, Wall C, Priami C, Lombardo R, Kussmann M.	Microbiome	10.1186/s40168-018-0545-x	2018
	MultiMetEval: comparative and multi-objective analysis of genome-scale metabolic models.	Zakrzewski P, Medema MH, Gevorgyan A, Kierzek AM, Breitling R, Takano E.	PLoS One	10.1371/journal.pone.0051511	2012
	A Study on the Synbiotic Composition of Bifidobacterium bifidum and Fructans from Arctium lappa Roots and Helianthus tuberosus Tubers against Staphylococcus aureus.	Evdokimova SA, Nokhaeva VS, Karetkin BA, Guseva EV, Khabibulina NV, Kornienko MA, Grosheva VD, Menshutina NV, Shakir IV, Panfilov VI.	Microorganisms	10.3390/microorganisms9050930	2021
Metabolism	Gut microbial-derived short-chain fatty acids and bone: a potential role in fracture healing.	Wallimann A, Magrath W, Thompson K, Moriarty T, Richards RG, Akdis CA, O'Mahony L, Hernandez CJ.	Eur Cell Mater	10.22203/ecm.v041a29	2021
Metabolism	Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010.	Turroni F, Strati F, Foroni E, Serafini F, Duranti S, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.00629-12	2012
Phylogeny	Phylogenomic Analyses and Comparative Studies on Genomes of the Bifidobacteriales: Identification of Molecular Signatures Specific for the Order Bifidobacteriales and Its Different Subclades.	Zhang G, Gao B, Adeolu M, Khadka B, Gupta RS.	Front Microbiol	10.3389/fmicb.2016.00978	2016
Genetics	Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species.	Zafar H, Saier MH.	Microb Physiol	10.1159/000518954	2022
Metabolism	Safety Evaluations of Bifidobacterium bifidum BGN4 and Bifidobacterium longum BORI.	Kim MJ, Ku S, Kim SY, Lee HH, Jin H, Kang S, Li R, Johnston TV, Park MS, Ji GE.	Int J Mol Sci	10.3390/ijms19051422	2018
	Encapsulated Food Products as a Strategy to Strengthen Immunity Against COVID-19.	Tripathy S, Verma DK, Thakur M, Patel AR, Srivastav PP, Singh S, Chavez-Gonzalez ML, Aguilar CN.	Front Nutr	10.3389/fnut.2021.673174	2021
Metabolism	Kinetics and metabolism of Bifidobacterium adolescentis MB 239 growing on glucose, galactose, lactose, and galactooligosaccharides.	Amaretti A, Bernardi T, Tamburini E, Zanoni S, Lomma M, Matteuzzi D, Rossi M.	Appl Environ Microbiol	10.1128/aem.02914-06	2007
Metabolism	Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003.	O'Connell Motherway M, Fitzgerald GF, Neirynck S, Ryan S, Steidler L, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.01169-08	2008
	A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.	Casaro MB, Thomas AM, Mendes E, Fukumori C, Ribeiro WR, Oliveira FA, Crisma AR, Murata GM, Bizzarro B, Sa-Nunes A, Setubal JC, Mayer MPA, Martins FS, Vieira AT, Antiorio ATFB, Tavares-de-Lima W, Camara NOS, Curi R, Dias-Neto E, Ferreira CM.	Microbiome	10.1186/s40168-021-01081-2	2021
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Genetics	Genome sequencing of Clostridium butyricum DKU-01, isolated from infant feces.	Mo S, Kim BS, Yun SJ, Lee JJ, Yoon SH, Oh CH.	Gut Pathog	10.1186/s13099-015-0055-3	2015
Phylogeny	Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.	Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.	Appl Environ Microbiol	10.1128/aem.00380-09	2009
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
Enzymology	Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation.	Szopinska JW, Gresse R, van der Marel S, Boekhorst J, Lukovac S, van Swam I, Franke B, Timmerman H, Belzer C, Arias Vasquez A.	BMC Microbiol	10.1186/s12866-018-1249-x	2018
	An ultraviolet-sensitive mutant of Zymomonas mobilis affecting the stability of its natural plasmid pZMO2.	Vartholomatos G, Typas MA, Drainas C.	Plasmid	10.1006/plas.1993.1002	1993
	Improved cloning vectors for bifidobacteria, based on the Bifidobacterium catenulatum pBC1 replicon.	Alvarez-Martin P, Belen Florez A, Margolles A, del Solar G, Mayo B.	Appl Environ Microbiol	10.1128/aem.00074-08	2008
Pathogenicity	In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
	Effect of Dietary l-arabinose on the Intestinal Microbiota and Metabolism of Dietary Daidzein in Adult Mice.	Tamura M, Kurusu Y, Hori S.	Biosci Microbiota Food Health	10.12938/bmfh.31.59	2012
Metabolism	Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota.	Alessandri G, Milani C, Duranti S, Mancabelli L, Ranjanoro T, Modica S, Carnevali L, Statello R, Bottacini F, Turroni F, Ossiprandi MC, Sgoifo A, van Sinderen D, Ventura M.	Sci Rep	10.1038/s41598-019-42257-z	2019
	Self-targeting by CRISPR: gene regulation or autoimmunity?	Stern A, Keren L, Wurtzel O, Amitai G, Sorek R.	Trends Genet	10.1016/j.tig.2010.05.008	2010
Pathogenicity	In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.	Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.01038-10	2011
	Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium.	Foroni E, Serafini F, Amidani D, Turroni F, He F, Bottacini F, O'Connell Motherway M, Viappiani A, Zhang Z, Rivetti C, van Sinderen D, Ventura M.	Microb Cell Fact	10.1186/1475-2859-10-s1-s16	2011
	Analysis and stability of Zymomonas mobilis ATCC 10988 plasmid pZMO3.	Scordaki A, Drainas C.	Plasmid	10.1016/0147-619x(90)90044-d	1990
Metabolism	An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.	Ejby M, Fredslund F, Andersen JM, Vujicic Zagar A, Henriksen JR, Andersen TL, Svensson B, Slotboom DJ, Abou Hachem M.	J Biol Chem	10.1074/jbc.m116.746529	2016
	Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.	Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02894-16	2017
Phylogeny	Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon.	Milani C, Duranti S, Lugli GA, Bottacini F, Strati F, Arioli S, Foroni E, Turroni F, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.00984-13	2013
Enzymology	Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.	Yamamoto T, Morotomi M, Tanaka R.	Appl Environ Microbiol	10.1128/aem.58.12.4076-4079.1992	1992
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Enzymology	A quantitative model of Bacillus cereus ATCC 9634 growth inhibition by bifidobacteria for synbiotic effect evaluation.	Karetkin BA, Guseva EV, Evdokimova SA, Mishchenko AS, Khabibulina NV, Grosheva VD, Menshutina NV, Panfilov VI	World J Microbiol Biotechnol	10.1007/s11274-019-2665-2	2019
Metabolism	Estimation of microbial phosphate-accumulation abilities.	Anand A, Aoyagi H	Sci Rep	10.1038/s41598-018-37752-8	2019
Pathogenicity	Polysaccharide fractions from Fortunella margarita affect proliferation of Bifidobacterium adolescentis ATCC 15703 and undergo structural changes following fermentation.	Chen P, You Q, Li X, Chang Q, Zhang Y, Zheng B, Hu X, Zeng H	Int J Biol Macromol	10.1016/j.ijbiomac.2018.11.163	2018
	Promoting Probiotics Survival by Microencapsualtion with Hylon Starch and Genipin Cross-linked Coatings in Simulated Gastro-intestinal Condition and Heat Treatment.	Khosravi Zanjani MA, Ehsani MR, Ghiassi Tarzi B, Sharifan A	Iran J Pharm Res		2018
	Characterization of a GH36 beta-L-Arabinopyranosidase in Bifidobacterium adolescentis.	Sasaki Y, Togo N, Kitahara K, Fujita K	J Appl Glycosci (1999)	10.5458/jag.jag.JAG-2018_001	2018
	Prophylactic Bifidobacterium adolescentis ATTCC 15703 supplementation reduces partially allergic airway disease in Balb/c but not in C57BL/6 mice.	Casaro MC, Crisma AR, Vieira AT, Silva GHM, Mendes E, Ribeiro WR, Martins FS, Ferreira CM	Benef Microbes	10.3920/BM2017.0073	2018
Metabolism	Valorization of Brewer's spent grain to prebiotic oligosaccharide: Production, xylanase catalyzed hydrolysis, in-vitro evaluation with probiotic strains and in a batch human fecal fermentation model.	Sajib M, Falck P, Sardari RRR, Mathew S, Grey C, Karlsson EN, Adlercreutz P	J Biotechnol	10.1016/j.jbiotec.2018.01.005	2018
Pathogenicity	Bifidobacterium adolescentis (DSM 20083) and Lactobacillus casei (Lafti L26-DSL): Probiotics Able to Block the In Vitro Adherence of Rotavirus in MA104 Cells.	Fernandez-Duarte KP, Olaya-Galan NN, Salas-Cardenas SP, Lopez-Rozo J, Gutierrez-Fernandez MF	Probiotics Antimicrob Proteins	10.1007/s12602-017-9277-7	2018
	Measurements of Intra- and Extra-Cellular 5-Methyltetrahydrofolate Indicate that Bifidobacterium Adolescentis DSM 20083(T) and Bifidobacterium Pseudocatenulatum DSM 20438(T) Do Not Actively Excrete 5-Methyltetrahydrofolate In vitro.	Kopp M, Durr K, Steigleder M, Clavel T, Rychlik M	Front Microbiol	10.3389/fmicb.2017.00445	2017
Metabolism	Development of stable isotope dilution assays for the quantitation of intra- and extracellular folate patterns of Bifidobacterium adolescentis.	Kopp M, Durr K, Steigleder M, Clavel T, Rychlik M	J Chromatogr A	10.1016/j.chroma.2016.09.048	2016
Metabolism	Biochemical identification of the catalytic residues of a glycoside hydrolase family 120 beta-xylosidase, involved in xylooligosaccharide metabolisation by gut bacteria.	Cecchini DA, Faure R, Laville E, Potocki-Veronese G	FEBS Lett	10.1016/j.febslet.2015.08.012	2015
Pathogenicity	Enzymatic production of HMO mimics by the sialylation of galacto-oligosaccharides.	Wang Y, Jiang K, Ma H, Zeng W, Wang PG, Yao N, Han W, Cheng J, Wang W	Food Chem	10.1016/j.foodchem.2015.02.064	2015
Pathogenicity	Antibodies to Lactobacilli and Bifidobacteria in young children with different propensity to develop islet autoimmunity.	Talja I, Kubo AL, Veijola R, Knip M, Simell O, Ilonen J, Vaha-Makila M, Sepp E, Mikelsaar M, Utt M, Uibo R	J Immunol Res	10.1155/2014/325938	2014
Phylogeny	Reclassification of Bifidobacterium stercoris Kim et al. 2010 as a later heterotypic synonym of Bifidobacterium adolescentis.	Killer J, Sedlacek I, Rada V, Havlik J, Kopecny J	Int J Syst Evol Microbiol	10.1099/ijs.0.054957-0	2013
Metabolism	Motif-guided identification of a glycoside hydrolase family 1 alpha-L-arabinofuranosidase in Bifidobacterium adolescentis.	Suzuki H, Murakami A, Yoshida K	Biosci Biotechnol Biochem	10.1271/bbb.130279	2013
Metabolism	Xylooligosaccharides from hardwood and cereal xylans produced by a thermostable xylanase as carbon sources for Lactobacillus brevis and Bifidobacterium adolescentis.	Falck P, Precha-Atsawanan S, Grey C, Immerzeel P, Stalbrand H, Adlercreutz P, Karlsson EN	J Agric Food Chem	10.1021/jf401249g	2013
Genetics	A targeted gene knockout method using a newly constructed temperature-sensitive plasmid mediated homologous recombination in Bifidobacterium longum.	Sakaguchi K, He J, Tani S, Kano Y, Suzuki T	Appl Microbiol Biotechnol	10.1007/s00253-012-4090-4	2012
Enzymology	Cloning and characterization of ginsenoside Ra1-hydrolyzing beta-D-xylosidase from Bifidobacterium breve K-110.	Hyun YJ, Kim B, Kim DH	J Microbiol Biotechnol	10.4014/jmb.1110.10001	2012
Metabolism	Plasmid artificial modification: a novel method for efficient DNA transfer into bacteria.	Suzuki T, Yasui K	Methods Mol Biol	10.1007/978-1-61779-197-0_18	2011
Metabolism	Celiac disease in patients with type 1 diabetes: a condition with distinct changes in intestinal immunity?	Uibo R, Panarina M, Teesalu K, Talja I, Sepp E, Utt M, Mikelsaar M, Heilman K, Uibo O, Vorobjova T	Cell Mol Immunol	10.1038/cmi.2010.66	2011
	Characterization of recombinant beta-fructofuranosidase from Bifidobacterium adolescentis G1.	Omori T, Ueno K, Muramatsu K, Kikuchi M, Onodera S, Shiomi N	Chem Cent J	10.1186/1752-153X-4-9	2010
Metabolism	In vitro fermentation of arabinoxylan-derived carbohydrates by bifidobacteria and mixed fecal microbiota.	Pastell H, Westermann P, Meyer AS, Tuomainen P, Tenkanen M	J Agric Food Chem	10.1021/jf901397b	2009
Phylogeny	Intra-species diversity between seven Bifidobacterium adolescentis strains identified by genome-wide tiling array analysis.	Yasui K, Tabata M, Yamada S, Abe T, Ikemura T, Osawa R, Suzuki T	Biosci Biotechnol Biochem	10.1271/bbb.80843	2009
	Improvement of bacterial transformation efficiency using plasmid artificial modification.	Yasui K, Kano Y, Tanaka K, Watanabe K, Shimizu-Kadota M, Yoshikawa H, Suzuki T	Nucleic Acids Res	10.1093/nar/gkn884	2008
Metabolism	Assessment on the fermentability of xylooligosaccharides from rice husks by probiotic bacteria.	Gullon P, Moura P, Esteves MP, Girio FM, Dominguez H, Parajo JC	J Agric Food Chem	10.1021/jf800715b	2008
Metabolism	Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.	Belenguer A, Duncan SH, Calder AG, Holtrop G, Louis P, Lobley GE, Flint HJ	Appl Environ Microbiol	10.1128/AEM.72.5.3593-3599.2006	2006
Metabolism	Increasing the transglycosylation activity of alpha-galactosidase from Bifidobacterium adolescentis DSM 20083 by site-directed mutagenesis.	Hinz SW, Doeswijk-Voragen CH, Schipperus R, van den Broek LA, Vincken JP, Voragen AG	Biotechnol Bioeng	10.1002/bit.20713	2006
Enzymology	Cloning and characterization of arabinoxylan arabinofuranohydrolase-D3 (AXHd3) from Bifidobacterium adolescentis DSM20083.	van den Broek LA, Lloyd RM, Beldman G, Verdoes JC, McCleary BV, Voragen AG	Appl Microbiol Biotechnol	10.1007/s00253-004-1850-9	2005
Metabolism	beta-galactosidase from Bifidobacterium adolescentis DSM20083 prefers beta(1,4)-galactosides over lactose.	Hinz SW, van den Brock LA, Beldman G, Vincken JP, Voragen AG	Appl Microbiol Biotechnol	10.1007/s00253-004-1745-9	2004
Enzymology	Physico-chemical and transglucosylation properties of recombinant sucrose phosphorylase from Bifidobacterium adolescentis DSM20083.	van den Broek LA, van Boxtel EL, Kievit RP, Verhoef R, Beldman G, Voragen AG	Appl Microbiol Biotechnol	10.1007/s00253-003-1534-x	2004
Enzymology	Cloning and characterization of two alpha-glucosidases from Bifidobacterium adolescentis DSM20083.	van den Broek LA, Struijs K, Verdoes JC, Beldman G, Voragen AG	Appl Microbiol Biotechnol	10.1007/s00253-002-1179-1	2003
Pathogenicity	Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress.	Amor KB, Breeuwer P, Verbaarschot P, Rombouts FM, Akkermans AD, De Vos WM, Abee T	Appl Environ Microbiol	10.1128/AEM.68.11.5209-5216.2002	2002
Enzymology	Characterization of a novel beta-galactosidase from Bifidobacterium adolescentis DSM 20083 active towards transgalactooligosaccharides.	Van Laere KM, Abee T, Schols HA, Beldman G, Voragen AG	Appl Environ Microbiol	10.1128/AEM.66.4.1379-1384.2000	2000
Enzymology	Transglycosidase activity of Bifidobacterium adolescentis DSM 20083 alpha-galactosidase.	Van Laere KM, Hartemink R, Beldman G, Pitson S, Dijkema C, Schols HA, Voragen AG	Appl Microbiol Biotechnol	10.1007/s002530051579	1999
Enzymology	Alpha-galactosidase of Bifidobacterium adolescentis DSM 20083.	Leder S, Hartmeier W, Marx SP	Curr Microbiol	10.1007/s002849900411	1999
Metabolism	A new arabinofuranohydrolase from Bifidobacterium adolescentis able to remove arabinosyl residues from double-substituted xylose units in arabinoxylan.	Van Laere KM, Beldman G, Voragen AG	Appl Microbiol Biotechnol	10.1007/s002530050918	1997
Phylogeny	Bifidobacterium faecale sp. nov., isolated from human faeces.	Choi JH, Lee KM, Lee MK, Cha CJ, Kim GB	Int J Syst Evol Microbiol	10.1099/ijs.0.063479-0	2014
Phylogeny	Bifidobacterium stercoris sp. nov., isolated from human faeces.	Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.019943-0	2010

References

#8510	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20083
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32787	; Curators of the CIP;
#65604	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18363
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116048	Collection of Institut Pasteur ; Curators of the CIP; CIP 64.59
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
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Bifidobacterium adolescentis (DSM 20083, ATCC 15703, CCUG 18363)

Name and taxonomic classification