Strain identifier
BacDive ID: 16808
Type strain: 
Species: Carboxydothermus siderophilus
Strain Designation: 1315
Strain history: <- T. V. Slepova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1315 <- T. V. Slepova {2006}
NCBI tax ID(s): 441616 (species)
version 8.1 (current version)
General
@ref: 15601
BacDive-ID: 16808
DSM-Number: 21278
keywords: 16S sequence, Bacteria, anaerobe, thermophilic, Gram-positive, rod-shaped
description: Carboxydothermus siderophilus 1315 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 441616
- Matching level: species
strain history
- @ref: 15601
- history: <- T. V. Slepova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1315 <- T. V. Slepova {2006}
doi: 10.13145/bacdive16808.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermoanaerobacterales
- family: Thermoanaerobacteraceae
- genus: Carboxydothermus
- species: Carboxydothermus siderophilus
- full scientific name: Carboxydothermus siderophilus Slepova et al. 2009
@ref: 15601
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Thermoanaerobacteraceae
genus: Carboxydothermus
species: Carboxydothermus siderophilus
full scientific name: Carboxydothermus siderophilus Slepova et al. 2009
strain designation: 1315
type strain: yes
Morphology
cell morphology
- @ref: 28890
- gram stain: positive
- cell length: 1.1 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
- @ref: 15601
- name: CARBOXYDOTHERMUS SIDEROPHILUS MEDIUM (DSMZ Medium 507a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/507a
- composition: Name: CARBOXYDOTHERMUS SIDEROPHILUS MEDIUM (DSMZ Medium 507a) Composition: Na2-9,10-anthraquinone-2,6-disulfonate 8.16024 g/l NaHCO3 0.98912 g/l MgCl2 x 6 H2O 0.514342 g/l KCl 0.326409 g/l KH2PO4 0.326409 g/l NH4Cl 0.326409 g/l CaCl2 x 2 H2O 0.286845 g/l Yeast extract 0.197824 g/l Na2-EDTA 0.0049456 g/l H3BO3 0.00296736 g/l FeSO4 x 7 H2O 0.00197824 g/l CoCl2 x 6 H2O 0.00197824 g/l ZnSO4 x 7 H2O 0.00098912 g/l MnCl2 x 4 H2O 0.000296736 g/l Na2MoO4 x 2 H2O 0.000296736 g/l NiCl2 x 6 H2O 0.000197824 g/l CuCl2 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15601 | positive | growth | 65 | thermophilic |
| 28890 | positive | growth | 52-70 | thermophilic |
| 28890 | positive | optimum | 65 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 28890 | positive | growth | 5.5-8.5 | alkaliphile |
| 28890 | positive | optimum | 6.85 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 15601 | anaerobe |
| 28890 | anaerobe |
spore formation
- @ref: 28890
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28890 | 17234 | glucose | + | carbon source |
| 28890 | 24996 | lactate | + | carbon source |
| 28890 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 15601
- sample type: hot spring
- geographic location: Kamchatka
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_4353.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16249;96_2183;97_2641;98_3274;99_4353&stattab=map
- Last taxonomy: Carboxydothermus
- 16S sequence: EF542810
- Sequence Identity:
- Total samples: 37
- soil counts: 3
- aquatic counts: 17
- animal counts: 16
- plant counts: 1
Sequence information
16S sequences
- @ref: 15601
- description: Carboxydothermus siderophilus strain 1315 16S ribosomal RNA gene, partial sequence
- accession: EF542810
- length: 1518
- database: ena
- NCBI tax ID: 441616
GC content
| @ref | GC-content |
|---|---|
| 15601 | 39.6 |
| 28890 | 41.5 |
External links
@ref: 15601
culture collection no.: DSM 21278, VKM B-2474, VKPM 9905B
straininfo link
- @ref: 85821
- straininfo: 400905
literature
- topic: Phylogeny
- Pubmed-ID: 19196756
- title: Carboxydothermus siderophilus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic, dissimilatory Fe(III)-reducing bacterium from a Kamchatka hot spring.
- authors: Slepova TV, Sokolova TG, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000620-0
- year: 2009
- mesh: Carbon Dioxide/*metabolism, Ferric Compounds/chemistry, Gram-Positive Asporogenous Rods, Irregular/*classification/genetics/growth & development/metabolism/ultrastructure, Hot Springs/*microbiology, *Hot Temperature, Hydrogen/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15601 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21278) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21278 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 28890 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25330 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85821 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400905.1 | StrainInfo: A central database for resolving microbial strain identifiers |