Name: Carboxydothermus siderophilus 1315
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16808

Type strain:

Species: Carboxydothermus siderophilus

Strain Designation: 1315

Culture col. no.: DSM 21278, VKM B-2474, VKPM 9905B

Strain history: <- T. V. Slepova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1315 <- T. V. Slepova {2006}

NCBI tax ID(s): 441616 (species)

SI-ID 400905

DSM 21278

Section

Carboxydothermus siderophilus 1315 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from hot spring.

Gram-positive
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Carboxydothermus*
	Species	**Carboxydothermus siderophilus**
	Full Scientific Name (LPSN)	Carboxydothermus siderophilus Slepova et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28890]	Gram stain	positive

[Ref.: #28890]	Cell length	1.1 µm

[Ref.: #28890]	Cell width	0.5 µm

[Ref.: #28890]	Cell shape	rod-shaped

[Ref.: #28890]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15601]

Culture medium

CARBOXYDOTHERMUS SIDEROPHILUS MEDIUM (DSMZ Medium 507a)

[Ref.: #15601]

Culture medium growth

[Ref.: #15601]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15601]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15601]	growth	65 °C
[Ref.: #28890]	growth	52-70 °C
[Ref.: #28890]	optimum	65 °C

[Ref.: #15601]	Temperature range	thermophilic
[Ref.: #28890]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #28890]			optimum	6.85
[Ref.: #28890]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15601]	Oxygen tolerance	anaerobe
[Ref.: #28890]	Oxygen tolerance	anaerobe

[Ref.: #28890]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28890]	glucose ChEBI	+	carbon source
[Ref.: #28890]	lactate ChEBI	+	carbon source
[Ref.: #28890]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15601]	Sample type/isolated from	hot spring
[Ref.: #15601]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #15601]	Country	Russia
[Ref.: #15601]	Country ISO 3 Code	RUS
[Ref.: #15601]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF542810 (>99% sequence identity) for Carboxydothermus from Microbeatlas

Aquatic Samples	17
Soil Samples	3
Animal Samples	16
Plant Samples	1
Total Samples	37

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15601]	Carboxydothermus siderophilus strain 1315 16S ribosomal RNA gene, partial sequence	EF542810	1518	ENA	441616 tax ID

[Ref.: #15601]	GC-content	39.6 mol%
[Ref.: #28890]	GC-content	41.5 mol%

Availability in culture collections External links

[Ref.: #15601]

Culture collection no.

DSM 21278, VKM B-2474, VKPM 9905B

[Ref.: #85821]

SI-ID 400905

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Carboxydothermus siderophilus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic, dissimilatory Fe(III)-reducing bacterium from a Kamchatka hot spring.	Slepova TV, Sokolova TG, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijs.0.000620-0	2009	*

References

#15601

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21278

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28890

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25330 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85821

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400905.1 )

#25330

IJSEM 213 2009 ( DOI 10.1099/ijs.0.000620-0 , PubMed 19196756 )

* These data were automatically processed and therefore are not curated

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