Strain identifier

BacDive ID: 16794

Type strain: Yes

Species: Caldanaerobacter subterraneus subsp. subterraneus

Strain Designation: 7858

Culture col. no.: DSM 13054, CNCM I-2383

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General

@ref: 4887

BacDive-ID: 16794

DSM-Number: 13054

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, thermophilic

description: Caldanaerobacter subterraneus subsp. subterraneus 7858 is an anaerobe, thermophilic bacterium that was isolated from oil field.

strain history: <- M.-L. Fardeau, Universités de Provence et de la Méditerranée, ESIL, Marseille, France; 7858 <- M.-L. Fardeau {1996}

doi: 10.13145/bacdive16794.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Thermoanaerobacterales
  • family: Thermoanaerobacteraceae
  • genus: Caldanaerobacter
  • species: Caldanaerobacter subterraneus
  • full scientific name: Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Thermoanaerobacter subterraneus

@ref: 4887

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Thermoanaerobacterales

family: Thermoanaerobacteraceae

genus: Caldanaerobacter

species: Caldanaerobacter subterraneus subsp. subterraneus

full scientific name: Caldanaerobacter subterraneus subsp. subterraneus (Fardeau et al. 2000) Fardeau et al. 2004

strain designation: 7858

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4887
  • name: THERMOANAEROBACTER SUBTERRANEUS MEDIUM (DSMZ Medium 899), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium899.pdf

culture temp

  • @ref: 4887
  • growth: positive
  • type: growth
  • temperature: 65
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4887
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4887
  • sample type: oil field
  • geographic location: Lacq Supérieur
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Oil reservoir

Safety information

risk assessment

  • @ref: 4887
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
4887Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 1HE5827581562ena911092
4887Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 2HE5827591526ena911092
4887Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 3HE5827601525ena911092
4887Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 4HE5827611531ena911092

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caldanaerobacter subterraneus DSM 13054GCA_004345675scaffoldncbi911092
66792Caldanaerobacter subterraneus 1523vcGCA_013004485contigncbi911092
66792Caldanaerobacter subterraneus 38_43GCA_001507995contigncbi911092
66792Caldanaerobacter subterraneus UBA12544GCA_003510725scaffoldncbi911092
66792Caldanaerobacter subterraneus 34_81GCA_001508895contigncbi911092
66792Caldanaerobacter subterraneus strain 34_81911092.4wgspatric911092
66792Caldanaerobacter subterraneus strain 38_43911092.3wgspatric911092
66792Caldanaerobacter subterraneus strain DSM 13054911092.6wgspatric911092
66792Caldanaerobacter subterraneus strain UBA12544911092.5wgspatric911092
66792Caldanaerobacter subterraneus DSM 130542802428857permanentimg911092

External links

@ref: 4887

culture collection no.: DSM 13054, CNCM I-2383

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/122041

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4887Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13054)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13054
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)