Name: Caldanaerobacter subterraneus 7858
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16794

Type strain:

Species: Caldanaerobacter subterraneus

Strain Designation: 7858

Culture col. no.: DSM 13054, CNCM I-2383

Strain history: <- M.-L. Fardeau, Universités de Provence et de la Méditerranée, ESIL, Marseille, France; 7858 <- M.-L. Fardeau {1996}

NCBI tax ID(s): 911092 (species)

SI-ID 45452

ATCC BAA-225, DSM 13054

Other strains from Caldanaerobacter subterraneus

C. subterraneus OCA1, DSM 15729
C. subterraneus SL9, DSM 14441
C. subterraneus SL9, CIP 107100

Section

Caldanaerobacter subterraneus 7858 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from oil field.

Gram-positive
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Caldanaerobacter*
	Species	**Caldanaerobacter subterraneus**
	Full Scientific Name (LPSN)	Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et al. 2004

Synonym

Thermoanaerobacter subterraneus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4887]

Culture medium

THERMOANAEROBACTER SUBTERRANEUS MEDIUM (DSMZ Medium 899)

[Ref.: #4887]

Culture medium growth

[Ref.: #4887]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4887]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4887]			growth	65 °C

[Ref.: #4887]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4887]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.673

[Ref.: #69480]

Ability of spore formation

yes Confidence in %99.447

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4887]	Sample type/isolated from	oil field
[Ref.: #4887]	Geographic location (country and/or sea, region)	Lacq Supérieur
[Ref.: #4887]	Country	France
[Ref.: #4887]	Country ISO 3 Code	FRA
[Ref.: #4887]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4887]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4887]	Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 1	HE582758	1562	ENA	911092 tax ID
[Ref.: #4887]	Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 2	HE582759	1526	ENA	911092 tax ID
[Ref.: #4887]	Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 3	HE582760	1525	ENA	911092 tax ID
[Ref.: #4887]	Caldanaerobacter subterraneus partial 16S rRNA gene, type strain DSM 13054T, clone 4	HE582761	1531	ENA	911092 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldanaerobacter subterraneus DSM 13054	GCA_004345675	scaffold	GenBank	911092 tax ID	*
[Ref.: #66792]	Caldanaerobacter subterraneus strain DSM 13054	911092.6	wgs	PATRIC	911092 tax ID	*
[Ref.: #66792]	Caldanaerobacter subterraneus DSM 13054	2802428857	draft	JGI IMG/M	911092 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caldanaerobacter subterraneus strain DSM 13054 PATRIC: 911092.5
[Ref.: #69481]	spore-forming	yes	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldanaerobacter subterraneus DSM 13054 NCBI: GCA_004345675.1
[Ref.: #69480]	motile	yes	84.743	no
[Ref.: #69480]	flagellated	no	84.807	no
[Ref.: #69480]	gram-positive	no	50	no
[Ref.: #69480]	anaerobic	yes	98.995	yes
[Ref.: #69480]	aerobic	no	98.188	yes
[Ref.: #69480]	halophile	no	95.483	no
[Ref.: #69480]	spore-forming	yes	90.363	no
[Ref.: #69480]	glucose-util	yes	93.578	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	yes	56.205	no

Availability in culture collections External links

[Ref.: #4887]

Culture collection no.

DSM 13054, CNCM I-2383

[Ref.: #85810]

SI-ID 45452

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. nov. as four novel subspecies.	Fardeau ML, Salinas MB, L'Haridon S, Jeanthon C, Verhe F, Cayol JL, Patel BKC, Garcia JL, Ollivier B	Int J Syst Evol Microbiol	10.1099/ijs.0.02711-0	2004	*
Phylogeny	Thermoanaerobacter subterraneus sp. nov., a novel thermophile isolated from oilfield water.	Fardeau ML, Magot M, Patel BK, Thomas P, Garcia JL, Ollivier B	Int J Syst Evol Microbiol	10.1099/00207713-50-6-2141	2000	*

References

#4887

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13054

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85810

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45452.1 )

* These data were automatically processed and therefore are not curated

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Caldanaerobacter subterraneus strain DSM 13054

Caldanaerobacter subterraneus DSM 13054

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