Strain identifier
BacDive ID: 16749
Type strain: 
Species: Mechercharimyces mesophilus
Strain Designation: YM3-251
Strain history: <- A. Katsuta, MBIC <- Y. Matsuo; YM3-251
NCBI tax ID(s): 354237 (species)
version 9 (current version)
General
@ref: 12179
BacDive-ID: 16749
DSM-Number: 44894
keywords: 16S sequence, Bacteria
description: Mechercharimyces mesophilus YM3-251 is a bacterium that was isolated from sediment sample from a marine lake.
NCBI tax id
- NCBI tax id: 354237
- Matching level: species
strain history
- @ref: 12179
- history: <- A. Katsuta, MBIC <- Y. Matsuo; YM3-251
doi: 10.13145/bacdive16749.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Mechercharimyces
- species: Mechercharimyces mesophilus
- full scientific name: Mechercharimyces mesophilus Matsuo et al. 2006
@ref: 12179
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Mechercharimyces
species: Mechercharimyces mesophilus
full scientific name: Mechercharimyces mesophilus Matsuo et al. 2006
strain designation: YM3-251
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12179 | TCG MEDIUM (DSMZ Medium 1009) | yes | https://mediadive.dsmz.de/medium/1009 | Name: TCG MEDIUM (DSMZ Medium 1009) Composition: Casitone 5.0 g/l Glucose 4.0 g/l Tryptone 3.0 g/l Sea water |
| 12179 | SEA WATER AGAR (DSMZ Medium 246) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium246.pdf | |
| 12179 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf |
culture temp
- @ref: 12179
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 12179
- sample type: sediment sample from a marine lake
- geographic location: Jellyfish Lake
- country: Palau
- origin.country: PLW
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_64790.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_28147;97_35451;98_45787;99_64790&stattab=map
- Last taxonomy: Mechercharimyces
- 16S sequence: AB239529
- Sequence Identity:
- Total samples: 102
- soil counts: 15
- aquatic counts: 45
- animal counts: 39
- plant counts: 3
Safety information
risk assessment
- @ref: 12179
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 12179
- description: Mechercharimyces mesophilus gene for 16S rRNA, partial sequence, strain: YM3-251 (= MBIC06230)
- accession: AB239529
- length: 1481
- database: nuccore
- NCBI tax ID: 354237
GC content
- @ref: 12179
- GC-content: 45.1
External links
@ref: 12179
culture collection no.: DSM 44894, MBIC 06230
straininfo link
- @ref: 85767
- straininfo: 281427
literature
- topic: Phylogeny
- Pubmed-ID: 17158985
- title: Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov.
- authors: Matsuo Y, Katsuta A, Matsuda S, Shizuri Y, Yokota A, Kasai H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64223-0
- year: 2006
- mesh: Antineoplastic Agents/*metabolism, Bacterial Typing Techniques, DNA Gyrase/genetics, DNA, Bacterial/analysis, Genotype, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Bacteria/*classification/genetics/isolation & purification/physiology, Japan, Marine Biology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12179 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44894) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44894 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85767 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID281427.1 | StrainInfo: A central database for resolving microbial strain identifiers |