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Strain identifier

BacDive ID: 16749

Type strain: Yes

Species: Mechercharimyces mesophilus

Strain Designation: YM3-251

Strain history: <- A. Katsuta, MBIC <- Y. Matsuo; YM3-251

NCBI tax ID(s): 354237 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 12179

BacDive-ID: 16749

DSM-Number: 44894

keywords: 16S sequence, Bacteria, mesophilic

description: Mechercharimyces mesophilus YM3-251 is a mesophilic bacterium that was isolated from sediment sample from a marine lake.

NCBI tax id

  • NCBI tax id: 354237
  • Matching level: species

strain history: <- A. Katsuta, MBIC <- Y. Matsuo; YM3-251

doi: 10.13145/bacdive16749.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Thermoactinomycetaceae
  • genus: Mechercharimyces
  • species: Mechercharimyces mesophilus
  • full scientific name: Mechercharimyces mesophilus Matsuo et al. 2006

@ref: 12179

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Thermoactinomycetaceae

genus: Mechercharimyces

species: Mechercharimyces mesophilus

full scientific name: Mechercharimyces mesophilus Matsuo et al. 2006

strain designation: YM3-251

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12179TCG MEDIUM (DSMZ Medium 1009)yeshttps://mediadive.dsmz.de/medium/1009Name: TCG MEDIUM (DSMZ Medium 1009) Composition: Casitone 5.0 g/l Glucose 4.0 g/l Tryptone 3.0 g/l Sea water
12179SEA WATER AGAR (DSMZ Medium 246)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium246.pdf
12179BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 12179
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 12179
  • sample type: sediment sample from a marine lake
  • geographic location: Jellyfish Lake
  • country: Palau
  • origin.country: PLW
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_64790.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_28147;97_35451;98_45787;99_64790&stattab=map
  • Last taxonomy: Mechercharimyces
  • 16S sequence: AB239529
  • Sequence Identity:
  • Total samples: 102
  • soil counts: 15
  • aquatic counts: 45
  • animal counts: 39
  • plant counts: 3

Safety information

risk assessment

  • @ref: 12179
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12179
  • description: Mechercharimyces mesophilus gene for 16S rRNA, partial sequence, strain: YM3-251 (= MBIC06230)
  • accession: AB239529
  • length: 1481
  • database: ena
  • NCBI tax ID: 354237

GC content

  • @ref: 12179
  • GC-content: 45.1

External links

@ref: 12179

culture collection no.: DSM 44894, MBIC 06230

straininfo link

@refpassport
20218http://www.straininfo.net/strains/689981
20218http://www.straininfo.net/strains/661953

literature

  • topic: Phylogeny
  • Pubmed-ID: 17158985
  • title: Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov.
  • authors: Matsuo Y, Katsuta A, Matsuda S, Shizuri Y, Yokota A, Kasai H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64223-0
  • year: 2006
  • mesh: Antineoplastic Agents/*metabolism, Bacterial Typing Techniques, DNA Gyrase/genetics, DNA, Bacterial/analysis, Genotype, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Bacteria/*classification/genetics/isolation & purification/physiology, Japan, Marine Biology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12179Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44894)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44894
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta