General

@ref: 5649

BacDive-ID: 16734

DSM-Number: 14978

keywords: 16S sequence, Bacteria, microaerophile, thermophilic

description: Vulcanithermus mediatlanticus TR is a microaerophile, thermophilic bacterium that was isolated from deep-sea hydrothermal vent.

NCBI tax id

strain history

doi: 10.13145/bacdive16734.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Thermales
• family: Thermaceae
• genus: Vulcanithermus
• species: Vulcanithermus mediatlanticus
• full scientific name: Vulcanithermus mediatlanticus Miroshnichenko et al. 2003

@ref: 5649

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Thermales

family: Thermaceae

genus: Vulcanithermus

species: Vulcanithermus mediatlanticus

full scientific name: Vulcanithermus mediatlanticus Miroshnichenko et al. 2003

strain designation: TR

type strain: yes

Culture and growth conditions

culture medium

• @ref: 5649
• name: VULCANITHERMUS MEDIUM (DSMZ Medium 977)
• growth: yes
• link: https://mediadive.dsmz.de/medium/977
• composition: Name: VULCANITHERMUS MEDIUM (DSMZ Medium 977) Composition: PIPES 3.6 g/l Tryptone 1.0 g/l Sucrose 1.0 g/l Yeast extract 0.5 g/l NH4Cl 0.33 g/l KCl 0.33 g/l KNO3 0.33 g/l MgCl2 x 6 H2O 0.33 g/l MgSO4 x 7 H2O 0.003 g/l Nitrilotriacetic acid 0.0015 g/l NaCl 0.001 g/l MnSO4 x H2O 0.0005 g/l CoSO4 x 7 H2O 0.00018 g/l ZnSO4 x 7 H2O 0.00018 g/l CaCl2 x 2 H2O 0.0001 g/l FeSO4 x 7 H2O 0.0001 g/l NiCl2 x 6 H2O 3e-05 g/l AlK(SO4)2 x 12 H2O 2e-05 g/l CuSO4 x 5 H2O 1e-05 g/l Na2MoO4 x 2 H2O 1e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 1e-05 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine HCl 5e-06 g/l (DL)-alpha-Lipoic acid 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Calcium D-(+)-pantothenate 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l Na2WO4 x 2 H2O 4e-07 g/l Na2SeO3 x 5 H2O 3e-07 g/l Vitamin B12 1e-07 g/l Distilled water

culture temp

Physiology and metabolism

oxygen tolerance

• @ref: 5649
• oxygen tolerance: microaerophile

observation

• @ref: 67770
• observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_144088.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12684;96_55202;97_71223;98_95616;99_144088&stattab=map
• Last taxonomy: Vulcanithermus mediatlanticus subclade
• 16S sequence: AJ507298
• Sequence Identity:
• Total samples: 103
• soil counts: 25
• aquatic counts: 62
• animal counts: 14
• plant counts: 2

Safety information

risk assessment

• @ref: 5649
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 20218
• description: Vulcanithermus medioatlanticus 16S rRNA gene, type strain TR
• accession: AJ507298
• length: 1481
• database: ena
• NCBI tax ID: 947034

GC content

• @ref: 5649
• GC-content: 68.4

External links

@ref: 5649

culture collection no.: DSM 14978, JCM 11956, VKM B-2292

straininfo link

• @ref: 85752
• straininfo: 111796

literature

• topic: Phylogeny
• Pubmed-ID: 12892142
• title: Vulcanithermus mediatlanticus gen. nov., sp. nov., a novel member of the family Thermaceae from a deep-sea hot vent.
• authors: Miroshnichenko ML, L'Haridon S, Nercessian O, Antipov AN, Kostrikina NA, Tindall BJ, Schumann P, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA, Jeanthon C
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.02579-0
• year: 2003
• mesh: Atlantic Ocean, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/isolation & purification/metabolism, Hot Temperature, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology
• topic2: Metabolism

Reference