Strain identifier
BacDive ID: 16680
Type strain: 
Species: Desulfosoma profundi
Strain Designation: SPDX02-08
Strain history: M.-L. Fardeau SPDX02-08.
NCBI tax ID(s): 869805 (species)
version 8.1 (current version)
General
@ref: 16622
BacDive-ID: 16680
DSM-Number: 22937
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Desulfosoma profundi SPDX02-08 is an anaerobe, thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 869805
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16622 | <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; SPDX02-08 <- P. Gregoire {2009} |
| 67770 | M.-L. Fardeau SPDX02-08. |
doi: 10.13145/bacdive16680.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Syntrophobacterales
- family: Syntrophobacteraceae
- genus: Desulfosoma
- species: Desulfosoma profundi
- full scientific name: Desulfosoma profundi Grégoire et al. 2012
@ref: 16622
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophobacteraceae
genus: Desulfosoma
species: Desulfosoma profundi
full scientific name: Desulfosoma profundi Grégoire et al. 2012
strain designation: SPDX02-08
type strain: yes
Morphology
colony morphology
- @ref: 16622
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 16622
- name: DESULFOSOMA MEDIUM (DSMZ Medium 1456)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1456
- composition: Name: DESULFOSOMA MEDIUM (DSMZ Medium 1456) Composition: Na2SO4 2.8 g/l Na-pyruvate 2.5 g/l Na2CO3 1.5 g/l Yeast extract 1.0 g/l NH4Cl 1.0 g/l NaCl 1.0 g/l Trypticase peptone 1.0 g/l MgCl2 x 6 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Na2S x 9 H2O 0.5 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l CaCl2 x 2 H2O 0.1 g/l KCl 0.1 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16622 | positive | growth | 55 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 16622
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16622 | hot spring | Aquitaine Basin | France | FRA | Europe |
| 67770 | Deep hot aquifer in southwest France |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_85440.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_165;96_5980;97_45218;98_59177;99_85440&stattab=map
- Last taxonomy: Desulfosoma profundi subclade
- 16S sequence: HM056226
- Sequence Identity:
- Total samples: 333
- soil counts: 8
- aquatic counts: 314
- animal counts: 10
- plant counts: 1
Safety information
risk assessment
- @ref: 16622
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16622
- description: Desulfosoma profundi strain SPDX02-08 16S ribosomal RNA gene, partial sequence
- accession: HM056226
- length: 1459
- database: ena
- NCBI tax ID: 869805
GC content
- @ref: 16622
- GC-content: 57.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16622
culture collection no.: DSM 22937, JCM 16410
straininfo link
- @ref: 85700
- straininfo: 403325
literature
- topic: Phylogeny
- Pubmed-ID: 22120904
- title: Desulfosoma profundi sp. nov., a thermophilic sulfate-reducing bacterium isolated from a deep terrestrial geothermal spring in France.
- authors: Gregoire P, Fardeau ML, Guasco S, Lagiere J, Cambar J, Michotey V, Bonin P, Ollivier B
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-011-9675-x
- year: 2011
- mesh: Anaerobiosis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deltaproteobacteria/classification/genetics/*isolation & purification/metabolism/ultrastructure, Fatty Acids/metabolism, France, Hot Springs/*microbiology, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Alignment, Sequence Homology, Nucleic Acid, Species Specificity, Sulfates/*metabolism, *Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16622 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22937) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22937 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85700 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403325.1 | StrainInfo: A central database for resolving microbial strain identifiers |