Desulfosoma profundi (DSM 22937, JCM 16410, SPDX02-08)

Name: Desulfosoma profundi (DSM 22937, JCM 16410, SPDX02-08)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16680

Type strain

Strain Designation SPDX02-08

Culture col. no. DSM 22937 JCM 16410 SPDX02-08

NCBI tax ID(s) 869805

Special Collections DSMZ JCM

History DSMZ <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; SPDX02-08 <- P. Gregoire {2009} JCM <-- M.-L. Fardeau SPDX02-08.

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Desulfosoma profundi SPDX02-08 is an anaerobe bacterium that was isolated from hot spring.

anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403325

JCM 16410,DSM 22937

@ref 20215

Last LPSN update 2026-05-29 08:28:50

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Syntrophobacteria

Order Syntrophobacterales

Family Syntrophobacteraceae

Genus Desulfosoma

Species Desulfosoma profundi

Full scientific name Desulfosoma profundi Grégoire et al. 2012

Morphology

Colony morphology

16622

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16622	DESULFOSOMA MEDIUM (DSMZ Medium 1456)		Medium recipe at MediaDive	Name: DESULFOSOMA MEDIUM (DSMZ Medium 1456) Composition: Na2SO4 2.8 g/l Na-pyruvate 2.5 g/l Na2CO3 1.5 g/l Yeast extract 1.0 g/l NH4Cl 1.0 g/l NaCl 1.0 g/l Trypticase peptone 1.0 g/l MgCl2 x 6 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Na2S x 9 H2O 0.5 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l CaCl2 x 2 H2O 0.1 g/l KCl 0.1 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16622	positive	growth	55
67770	positive	growth	55

Physiology and metabolism

Oxygen tolerance

16622

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16622	hot spring	Aquitaine Basin	France	FRA	Europe
67770	Deep hot aquifer in southwest France

Taxonmaps

69479

Global distribution of 16S sequence HM056226 (>99% sequence identity) for Desulfosoma profundi subclade from Microbeatlas

Aquatic Samples	314
Soil Samples	8
Animal Samples	10
Plant Samples	1
Total Samples	333

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16622	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16622	Desulfosoma profundi strain SPDX02-08 16S ribosomal RNA gene, partial sequence	HM056226	1459		869805

GC content

@ref	GC-content (mol%)	Method
16622	57.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfosoma profundi sp. nov., a thermophilic sulfate-reducing bacterium isolated from a deep terrestrial geothermal spring in France.	Gregoire P, Fardeau ML, Guasco S, Lagiere J, Cambar J, Michotey V, Bonin P, Ollivier B	Antonie Van Leeuwenhoek	10.1007/s10482-011-9675-x	2011

References

#16622	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22937
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulfosoma profundi (DSM 22937, JCM 16410, SPDX02-08)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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