Strain identifier
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 166627
keywords: genome sequence, 16S sequence, Bacteria
description: Clostridium botulinum CIP 104310 is a bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 1491
- Matching level: species
doi: 10.13145/bacdive166627.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium botulinum
- full scientific name: Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus botulinus
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium botulinum
full scientific name: Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980)
type strain: yes
Safety information
risk assessment
- @ref: 20215
- biosafety level: 2
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Clostridium botulinum A 16S ribosomal RNA (16S rRNA) gene
- accession: L37585
- length: 1453
- database: ena
- NCBI tax ID: 36826
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium botulinum ATCC 25763 | GCA_001276985 | contig | ncbi | 1491 |
| 66792 | Clostridium botulinum ATCC 25763 | GCA_011017965 | contig | ncbi | 1491 |
| 66792 | Clostridium botulinum strain ATCC 25763 | 1491.447 | wgs | patric | 1491 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.48 | no |
| gram-positive | yes | 90.926 | no |
| anaerobic | yes | 97.973 | no |
| halophile | no | 82.749 | no |
| spore-forming | yes | 94.428 | no |
| thermophile | no | 94.514 | no |
| glucose-util | yes | 85.233 | no |
| flagellated | no | 54.965 | no |
| aerobic | no | 98.138 | no |
| glucose-ferment | yes | 64.915 | no |
External links
@ref: 20215
culture collection no.: CIP 104310, ATCC 25763
straininfo link
- @ref: 114821
- straininfo: 87684
literature
- topic: Cultivation
- Pubmed-ID: 7039510
- title: Effect of plating medium on heat activation requirement of Clostridium botulinum spores.
- authors: Montville TJ
- journal: Appl Environ Microbiol
- DOI: 10.1128/aem.42.4.734-736.1981
- year: 1981
- mesh: Clostridium botulinum/*growth & development, Culture Media, *Hot Temperature, Spores, Bacterial/growth & development
- topic2: Stress
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114821 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID87684.1 |