Strain identifier

BacDive ID: 166543

Type strain: Yes

Species: Pelagerythrobacter aerophilus

Strain Designation: Ery1

NCBI tax ID(s): 2306995 (species)

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General

@ref: 67930

BacDive-ID: 166543

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Pelagerythrobacter aerophilus Ery1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from deep-sea seawater at a depth of 6750 m.

NCBI tax id

  • NCBI tax id: 2306995
  • Matching level: species

doi: 10.13145/bacdive166543.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Pelagerythrobacter
  • species: Pelagerythrobacter aerophilus
  • full scientific name: Pelagerythrobacter aerophilus (Meng et al. 2019) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Altererythrobacter aerophilus

@ref: 67930

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Altererythrobacter

species: Altererythrobacter aerophilus

strain designation: Ery1

type strain: yes

Morphology

cell morphology

  • @ref: 67930
  • gram stain: negative
  • cell length: 1.4-2.7 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 67930
  • colony color: cream
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Marine agar (MA)

pigmentation

  • @ref: 67930
  • production: yes
  • name: carotenoid-like pigments

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67930positivegrowth10-45
67930positiveoptimum30-40

culture pH

@refabilitytypepHPH range
67930positivegrowth5.0-9.5alkaliphile
67930positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 67930
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
67930NaClpositivegrowth0.0-10.0 %(w/v)
67930NaClpositiveoptimum0.0-1.0 %(w/v)

observation

@refobservation
67930The major polar lipids are SGL, DPG, PG, PE, PC and GL1-3
67930moderate to minor amounts of PGL, PL1-3, GL4-7 and L1 are presen
67930The major respiratory quinone is Q-10, and the minor isopreoid quinone is Q-11
67930Sea salts are not required for growth

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6793053424tween 20+hydrolysis
6793053423tween 40+hydrolysis
6793053425tween 60+hydrolysis
6793053426tween 80-hydrolysis
679305291gelatin-hydrolysis
6793028017starch-hydrolysis
6793063005sodium nitrate-anaerobic growth
6793078870sodium nitrite-anaerobic growth
6793017057cellobiose+carbon source
6793012936D-galactose+carbon source
6793017234glucose+carbon source
6793029987glutamate+carbon source
6793017306maltose+carbon source
6793016899D-mannitol+carbon source
6793037684mannose+carbon source
6793017268myo-inositol+carbon source
6793030849L-arabinose-carbon source
6793015824D-fructose-carbon source
6793036219alpha-lactose-carbon source
679306731melezitose-carbon source
6793028044phenylalanine-carbon source
6793016634raffinose-carbon source
6793062345L-rhamnose-carbon source
6793050144sodium pyruvate-carbon source
6793030911sorbitol-carbon source
6793030031succinate-carbon source
6793017992sucrose-carbon source
6793018222xylose-carbon source
6793012936D-galactose+builds acid from
6793037684mannose+builds acid from
6793017057cellobiose-builds acid from
6793015824D-fructose-builds acid from
6793017234glucose-builds acid from
6793036219alpha-lactose-builds acid from
6793017306maltose-builds acid from
6793016899D-mannitol-builds acid from
679306731melezitose-builds acid from
6793017268myo-inositol-builds acid from
6793016634raffinose-builds acid from
6793062345L-rhamnose-builds acid from
6793030911sorbitol-builds acid from
6793018222xylose-builds acid from

metabolite production

  • @ref: 67930
  • metabolite: Bacteriochlorophyll alpha
  • production: no

enzymes

@refvalueactivityec
67930catalase+1.11.1.6
67930cytochrome oxidase+1.9.3.1
67930acid phosphatase+3.1.3.2
67930alkaline phosphatase+3.1.3.1
67930esterase (C 4)-
67930esterase Lipase (C 8)-
67930alpha-galactosidase+3.2.1.22
67930beta-galactosidase+3.2.1.23
67930alpha-glucosidase+3.2.1.20
67930beta-glucosidase+3.2.1.21
67930naphthol-AS-BI-phosphohydrolase+
67930valine arylamidase+
67930N-acetyl-beta-glucosaminidase-3.2.1.52
67930chymotrypsin-3.4.4.5
67930cystine arylamidase-3.4.11.3
67930beta-D-fucosidase-3.2.1.38
67930beta-glucuronidase-3.2.1.31
67930leucine arylamidase-3.4.11.1
67930lipase (C 14)-
67930alpha-mannosidase-3.2.1.24
67930trypsin-3.4.21.4

Isolation, sampling and environmental information

isolation

  • @ref: 67930
  • sample type: deep-sea seawater at a depth of 6750 m
  • sampling date: 2012-06
  • geographic location: Mariana Trench
  • country: Pacific ocean
  • latitude: 11
  • longitude: 141.9

Sequence information

16S sequences

  • @ref: 67930
  • description: Pelagerythrobacter aerophilus strain Ery1 16S ribosomal RNA gene, partial sequence
  • accession: MG183676
  • length: 1412
  • database: ena
  • NCBI tax ID: 2306995

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pelagerythrobacter aerophilus Ery12837529137draftimg2306995
67930Pelagerythrobacter aerophilus Ery1GCA_003581645contigncbi2306995

GC content

  • @ref: 67930
  • GC-content: 65.4
  • method: genome sequence analysis

External links

@ref: 67930

culture collection no.: KCTC 62387, CGMCC 1.16499, MCCC 1A10037

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67930Fan-Xu Meng, Guangyu Li, Chen Fang, Yue-Hong Wu, Hong Cheng, Yanwu Chen, Chun-Sheng Wang, Zongze Shao, Xue-Wei XuAltererythrobacter aerophilus sp. nov., isolated from deep-sea water of the north-west Pacific10.1099/ijsem.0.003377IJSEM 69: 1689-1695 2019