Name: Pelagerythrobacter aerophilus Ery1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166543

Type strain:

Species: Pelagerythrobacter aerophilus

Strain Designation: Ery1

Culture col. no.: KCTC 62387, CGMCC 1.16499, MCCC 1A10037

NCBI tax ID(s): 2306995 (species)

Section

Pelagerythrobacter aerophilus Ery1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from deep-sea seawater at a depth of 6750 m.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Pelagerythrobacter*
	Species	**Pelagerythrobacter aerophilus**
	Full Scientific Name (LPSN)	Pelagerythrobacter aerophilus (Meng et al. 2019) Xu et al. 2020

Synonym

Altererythrobacter aerophilus

Information on morphological and physiological properties Morphology

[Ref.: #67930]	Gram stain	negative
[Ref.: #67930]	Cell length	1.4-2.7 µm
[Ref.: #67930]	Cell width	0.4-0.5 µm
[Ref.: #67930]	Cell shape	rod-shaped
[Ref.: #67930]	Motility	no

[Ref.: #67930]	Colony color	cream
[Ref.: #67930]	Colony shape	circular
[Ref.: #67930]	Incubation period	2 days
[Ref.: #67930]	Cultivation medium used	Marine agar (MA)

[Ref.: #67930]	Pigment production	yes
[Ref.: #67930]	Pigment name	carotenoid-like pigments

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67930]			growth	10-45 °C
[Ref.: #67930]			optimum	30-40 °C

	pH	Kind of pH		pH
[Ref.: #67930]			optimum	6.0-7.0
[Ref.: #67930]			growth	5.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67930]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67930]		NaCl		growth	0.0-10.0	%(w/v)
[Ref.: #67930]		NaCl		optimum	0.0-1.0	%(w/v)

[Ref.: #67930]	Observation	The major polar lipids are SGL, DPG, PG, PE, PC and GL1-3
[Ref.: #67930]	Observation	moderate to minor amounts of PGL, PL1-3, GL4-7 and L1 are presen
[Ref.: #67930]	Observation	The major respiratory quinone is Q-10, and the minor isopreoid quinone is Q-11
[Ref.: #67930]	Observation	Sea salts are not required for growth

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67930]	alpha-lactose ChEBI	-	carbon source
[Ref.: #67930]	alpha-lactose ChEBI	-	builds acid from
[Ref.: #67930]	cellobiose ChEBI	+	carbon source
[Ref.: #67930]	cellobiose ChEBI	-	builds acid from
[Ref.: #67930]	D-fructose ChEBI	-	carbon source
[Ref.: #67930]	D-fructose ChEBI	-	builds acid from
[Ref.: #67930]	D-galactose ChEBI	+	carbon source
[Ref.: #67930]	D-galactose ChEBI	+	builds acid from
[Ref.: #67930]	D-mannitol ChEBI	+	carbon source
[Ref.: #67930]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67930]	gelatin ChEBI	-	hydrolysis
[Ref.: #67930]	glucose ChEBI	+	carbon source
[Ref.: #67930]	glucose ChEBI	-	builds acid from
[Ref.: #67930]	glutamate ChEBI	+	carbon source
[Ref.: #67930]	L-arabinose ChEBI	-	carbon source
[Ref.: #67930]	L-rhamnose ChEBI	-	carbon source
[Ref.: #67930]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67930]	maltose ChEBI	+	carbon source
[Ref.: #67930]	maltose ChEBI	-	builds acid from
[Ref.: #67930]	mannose ChEBI	+	carbon source
[Ref.: #67930]	mannose ChEBI	+	builds acid from
[Ref.: #67930]	melezitose ChEBI	-	carbon source
[Ref.: #67930]	melezitose ChEBI	-	builds acid from
[Ref.: #67930]	myo-inositol ChEBI	+	carbon source
[Ref.: #67930]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67930]	phenylalanine ChEBI	-	carbon source
[Ref.: #67930]	raffinose ChEBI	-	carbon source
[Ref.: #67930]	raffinose ChEBI	-	builds acid from
[Ref.: #67930]	sodium nitrate ChEBI	-	anaerobic growth
[Ref.: #67930]	sodium nitrite ChEBI	-	anaerobic growth
[Ref.: #67930]	sodium pyruvate ChEBI	-	carbon source
[Ref.: #67930]	sorbitol ChEBI	-	carbon source
[Ref.: #67930]	sorbitol ChEBI	-	builds acid from
[Ref.: #67930]	starch ChEBI	-	hydrolysis
[Ref.: #67930]	succinate ChEBI	-	carbon source
[Ref.: #67930]	sucrose ChEBI	-	carbon source
[Ref.: #67930]	tween 20 ChEBI	+	hydrolysis
[Ref.: #67930]	tween 40 ChEBI	+	hydrolysis
[Ref.: #67930]	tween 60 ChEBI	+	hydrolysis
[Ref.: #67930]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67930]	xylose ChEBI	-	carbon source
[Ref.: #67930]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67930]		Bacteriochlorophyll alpha	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67930]	acid phosphatase	+	3.1.3.2
[Ref.: #67930]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67930]	alpha-galactosidase	+	3.2.1.22
[Ref.: #67930]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67930]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67930]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #67930]	beta-galactosidase	+	3.2.1.23
[Ref.: #67930]	beta-glucosidase	+	3.2.1.21
[Ref.: #67930]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67930]	catalase	+	1.11.1.6
[Ref.: #67930]	chymotrypsin	-	3.4.4.5
[Ref.: #67930]	cystine arylamidase	-	3.4.11.3
[Ref.: #67930]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67930]	esterase (C 4)	-
[Ref.: #67930]	esterase Lipase (C 8)	-
[Ref.: #67930]	leucine arylamidase	-	3.4.11.1
[Ref.: #67930]	lipase (C 14)	-
[Ref.: #67930]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67930]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67930]	trypsin	-	3.4.21.4
[Ref.: #67930]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67930]	Sample type/isolated from	deep-sea seawater at a depth of 6750 m
[Ref.: #67930]	Sampling date	2012-06
[Ref.: #67930]	Geographic location (country and/or sea, region)	Mariana Trench
[Ref.: #67930]	Country	Pacific ocean
[Ref.: #67930]	Geographic location	11.0000°/141.9000°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67930]	Pelagerythrobacter aerophilus strain Ery1 16S ribosomal RNA gene, partial sequence	MG183676	1412	ENA	2306995 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67930]	Pelagerythrobacter aerophilus Ery1	GCA_003581645	contig	GenBank	2306995 tax ID
[Ref.: #66792]	Pelagerythrobacter aerophilus Ery1	2837529137	draft	JGI IMG/M	2306995 tax ID	*

[Ref.: #67930]

GC-content

65.4 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67930]

Culture collection no.

KCTC 62387, CGMCC 1.16499, MCCC 1A10037

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67930

Fan-Xu Meng, Guangyu Li, Chen Fang, Yue-Hong Wu, Hong Cheng, Yanwu Chen, Chun-Sheng Wang, Zongze Shao, Xue-Wei Xu: Altererythrobacter aerophilus sp. nov., isolated from deep-sea water of the north-west Pacific. IJSEM 69: 1689 - 1695 2019 ( DOI 10.1099/ijsem.0.003377 )

* These data were automatically processed and therefore are not curated

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