Strain identifier
BacDive ID: 166403
Type strain: 
Species: Deinococcus detaillensis
Strain Designation: H1
NCBI tax ID(s): 2592048 (species)
version 8.1 (current version)
General
@ref: 68288
BacDive-ID: 166403
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, pleomorphic-shaped, colony-forming
description: Deinococcus detaillensis H1 is an aerobe, Gram-positive, pleomorphic-shaped bacterium that forms circular colonies and was isolated from humus soil.
NCBI tax id
- NCBI tax id: 2592048
- Matching level: species
doi: 10.13145/bacdive166403.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus detaillensis
- full scientific name: Deinococcus detaillensis Zhang et al. 2021
@ref: 68288
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus detaillensis
strain designation: H1
type strain: yes
Morphology
cell morphology
- @ref: 68288
- gram stain: positive
- cell length: 1.1-1.4 µm
- cell width: 0.6-0.7 µm
- cell shape: pleomorphic-shaped
- motility: no
colony morphology
- @ref: 68288
- colony color: pink
- colony shape: circular
- incubation period: 5 days
- medium used: 1/5 TSA
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 68288 | positive | growth | 4-25 | |
| 68288 | positive | optimum | 15 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 68288 | positive | growth | 6-8 |
| 68288 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 68288
- oxygen tolerance: aerobe
spore formation
- @ref: 68288
- spore formation: no
halophily
- @ref: 68288
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %(w/v)
observation
- @ref: 68288
- observation: lethal dose of UV radiation for H1 is dose of 750 J m^-2
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68288 | 32528 | turanose | + | carbon source |
| 68288 | 17992 | sucrose | + | carbon source |
| 68288 | 15824 | D-fructose | + | carbon source |
| 68288 | 16899 | D-mannitol | + | carbon source |
| 68288 | 18333 | D-arabitol | + | carbon source |
| 68288 | 12936 | D-galactose | + | carbon source |
| 68288 | 78697 | D-fructose 6-phosphate | + | carbon source |
| 68288 | 70744 | glycyl-L-proline | + | carbon source |
| 68288 | 17309 | pectin | + | carbon source |
| 68288 | 16411 | acetic acid | + | carbon source |
| 68288 | 15740 | formate | + | carbon source |
| 68288 | 13705 | acetoacetate | + | carbon source |
| 68288 | 53423 | tween 40 | + | carbon source |
| 68288 | 23652 | dextrin | + | carbon source |
| 68288 | 16551 | D-trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68288 | catalase | + | 1.11.1.6 |
| 68288 | cytochrome oxidase | - | 1.9.3.1 |
| 68288 | esterase (C 4) | + | |
| 68288 | esterase Lipase (C 8) | + | |
| 68288 | lipase (C 14) | + | |
| 68288 | trypsin | + | 3.4.21.4 |
| 68288 | alpha-galactosidase | + | 3.2.1.22 |
| 68288 | N-acetyl-glucosidase | + | |
| 68288 | alpha-mannosidase | + | 3.2.1.24 |
| 68288 | beta-D-fucosidase | + | 3.2.1.38 |
fatty acid profile
fatty acids
@ref fatty acid percentage 68288 C12:0 1 68288 C14:1 w5c 0.5 68288 C14:0 1.7 68288 C15:1 w6c 1.1 68288 C14:0 2OH 1.5 68288 C16:0 w5c 0.9 68288 C16:0 20 68288 C17:0 cyclo 11.9 68288 C17:0 0.3 68288 C17:0 10-methyl 0.2 68288 C18:0 0.9 68288 C20:1 w7c 0.2 68288 C14:0 3OH/iso-C16:1 0.8 68288 C16:1 w7c/C16:1 w6c 58.5 - type of FA analysis: whole cell analysis
- incubation medium: 1/5 TSA broth
- incubation temperature: 15
- incubation time: 7
- software version: Sherlock 6.2B
- library/peak naming table: TSBA6
- system: MIS MIDI
- method/protocol: Sasser, 1990
Isolation, sampling and environmental information
isolation
- @ref: 68288
- sample type: humus soil
- geographic location: Detaille Island
- country: Antarctica
- origin.country: ATA
- continent: Australia and Oceania
- latitude: -66.8667
- longitude: -66.7833
- enrichment culture: 1/5 trypticase soy agar
- enrichment culture duration: 2 weeks
- enrichment culture temperature: 15
- isolation procedure: sample was irradiated with 8 kGy of gamma radiation (by a 60 Co gamma irradiator)
taxonmaps
- @ref: 69479
- File name: preview.99_47339.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4679;96_21490;97_26833;98_34156;99_47339&stattab=map
- Last taxonomy: Deinococcus
- 16S sequence: MN116004
- Sequence Identity:
- Total samples: 402
- soil counts: 110
- aquatic counts: 220
- animal counts: 56
- plant counts: 16
Sequence information
16S sequences
- @ref: 68288
- description: Deinococcus sp. H1 16S ribosomal RNA gene, partial sequence
- accession: MN116004
- length: 1415
- database: ena
- NCBI tax ID: 2592048
Genome sequences
- @ref: 68288
- description: Deinococcus detaillensis H1
- accession: GCA_007280555
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2592048
GC content
- @ref: 68288
- GC-content: 61.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.039 | yes |
| flagellated | no | 97.292 | yes |
| gram-positive | yes | 83.289 | yes |
| anaerobic | no | 98.855 | yes |
| aerobic | yes | 85.495 | yes |
| halophile | no | 97.049 | yes |
| spore-forming | no | 91.238 | yes |
| glucose-util | yes | 89.241 | no |
| thermophile | no | 78.233 | yes |
| glucose-ferment | no | 91.67 | no |
External links
@ref: 68288
culture collection no.: CGMCC 1.13938, JCM 33291
literature
- topic: Phylogeny
- Pubmed-ID: 32617606
- title: Deinococcus detaillensis sp. nov., isolated from humus soil in Antarctica.
- authors: Zhang K, Zhu J, Li S, Rao MPN, Li NM, Guo AY, Jiang Z, Tang QY, Wan Y, Zhang ZD, Li WJ
- journal: Arch Microbiol
- DOI: 10.1007/s00203-020-01920-0
- year: 2020
- mesh: Antarctic Regions, Base Composition, Deinococcus/chemistry/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Peptidoglycan/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, Species Specificity
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 68288 | Kun Zhang, Jing Zhu, Shuai Li, Manik Prabhu Narsing Rao, Ning-Mei Li, Ang-Yang Guo, Zhao Jiang, Qi-Yong Tang, Yi Wan, Zhi-Dong Zhang & Wen-Jun Li | Deinococcus detaillensis sp. nov., isolated from humus soil in Antarctica | 10.1007/s00203-020-01920-0 | Arch Microbiol 202: 2493-2498 2020 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |