Name: Deinococcus detaillensis H1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166403

Type strain:

Species: Deinococcus detaillensis

Strain Designation: H1

Culture col. no.: CGMCC 1.13938, JCM 33291

NCBI tax ID(s): 2592048 (species)

Special Collections

Section

Deinococcus detaillensis H1 is an aerobe, Gram-positive, pleomorphic-shaped bacterium that forms circular colonies and was isolated from humus soil.

colony-forming
Gram-positive
pleomorphic-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus detaillensis**
	Full Scientific Name (LPSN)	Deinococcus detaillensis Zhang et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68288]	Gram stain	positive

[Ref.: #68288]	Cell length	1.1-1.4 µm

[Ref.: #68288]	Cell width	0.6-0.7 µm

[Ref.: #68288]	Cell shape	pleomorphic-shaped

[Ref.: #68288]	Motility	no

[Ref.: #68288]	Colony color	pink
[Ref.: #68288]	Colony shape	circular
[Ref.: #68288]	Incubation period	5 days
[Ref.: #68288]	Cultivation medium used	1/5 TSA

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68288]			growth	4-25 °C
[Ref.: #68288]			optimum	15 °C

	pH	Kind of pH		pH
[Ref.: #68288]			optimum	7
[Ref.: #68288]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68288]

Oxygen tolerance

aerobe

[Ref.: #68288]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68288]		NaCl		growth	0-1	%(w/v)

[Ref.: #68288]

Observation

lethal dose of UV radiation for H1 is dose of 750 J m^-2

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68288]	acetic acid ChEBI	+	carbon source
[Ref.: #68288]	acetoacetate ChEBI	+	carbon source
[Ref.: #68288]	D-arabitol ChEBI	+	carbon source
[Ref.: #68288]	D-fructose ChEBI	+	carbon source
[Ref.: #68288]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #68288]	D-galactose ChEBI	+	carbon source
[Ref.: #68288]	D-mannitol ChEBI	+	carbon source
[Ref.: #68288]	D-trehalose ChEBI	+	carbon source
[Ref.: #68288]	dextrin ChEBI	+	carbon source
[Ref.: #68288]	formate ChEBI	+	carbon source
[Ref.: #68288]	glycyl-L-proline ChEBI	+	carbon source
[Ref.: #68288]	pectin ChEBI	+	carbon source
[Ref.: #68288]	sucrose ChEBI	+	carbon source
[Ref.: #68288]	turanose ChEBI	+	carbon source
[Ref.: #68288]	tween 40 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68288]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68288]	alpha-mannosidase	+	3.2.1.24
[Ref.: #68288]	beta-D-fucosidase	+	3.2.1.38
[Ref.: #68288]	catalase	+	1.11.1.6
[Ref.: #68288]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68288]	esterase (C 4)	+
[Ref.: #68288]	esterase Lipase (C 8)	+
[Ref.: #68288]	lipase (C 14)	+
[Ref.: #68288]	N-acetyl-glucosidase	+
[Ref.: #68288]	trypsin	+	3.4.21.4

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68288]

Fatty acid	Percentage
C16:1 w7c/C16:1 w6c	58.5
C16:0	20
C17:0 cyclo	11.9
C14:0	1.7
C14:0 2OH	1.5
C15:1 w6c	1.1
C12:0	1
C16:0 w5c	0.9
C18:0	0.9
C14:0 3OH/iso-C16:1	0.8
C14:1 w5c	0.5
C17:0	0.3
C17:0 10-methyl	0.2
C20:1 w7c	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68288]	Sample type/isolated from	humus soil
[Ref.: #68288]	Geographic location (country and/or sea, region)	Detaille Island
[Ref.: #68288]	Country	Antarctica
[Ref.: #68288]	Country ISO 3 Code	ATA
[Ref.: #68288]	Continent	Australia and Oceania
[Ref.: #68288]	Geographic location	-66.8667°/-66.7833°
[Ref.: #68288]	Enrichment culture	1/5 trypticase soy agar
[Ref.: #68288]	Enrichment culture duration	2 weeks
[Ref.: #68288]	Enrichment culture temperature	15 ̊C
[Ref.: #68288]	Isolation/enrichment procedure	sample was irradiated with 8 kGy of gamma radiation (by a 60 Co gamma irradiator)
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN116004 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	220
Soil Samples	110
Animal Samples	56
Plant Samples	16
Total Samples	402

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68288]	Deinococcus detaillensis strain H1 16S ribosomal RNA gene, partial sequence	MN116004	1415	GenBank ENA	2592048 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68288]	Deinococcus detaillensis H1	GCA_007280555	contig	GenBank ENA	2592048 tax ID

[Ref.: #68288]

GC-content

61.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus detaillensis H1 NCBI: GCA_007280555.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	60.516	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.932	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.877	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.752	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.31	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83.596	yes

Availability in culture collections External links

[Ref.: #68288]

Culture collection no.

CGMCC 1.13938, JCM 33291

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus detaillensis sp. nov., isolated from humus soil in Antarctica.	Zhang K, Zhu J, Li S, Rao MPN, Li NM, Guo AY, Jiang Z, Tang QY, Wan Y, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-020-01920-0	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68288

Kun Zhang, Jing Zhu, Shuai Li, Manik Prabhu Narsing Rao, Ning-Mei Li, Ang-Yang Guo, Zhao Jiang, Qi-Yong Tang, Yi Wan, Zhi-Dong Zhang & Wen-Jun Li: Deinococcus detaillensis sp. nov., isolated from humus soil in Antarctica. Arch Microbiol 202: 2493 - 2498 2020 ( DOI 10.1007/s00203-020-01920-0 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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