Strain identifier

BacDive ID: 16634

Type strain: Yes

Species: Anaerobiospirillum thomasii

Strain Designation: A 273/88

Strain history: <- NCTC <- H. Malnick, A 273/88

NCBI tax ID(s): 179995 (species)

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General

@ref: 4495

BacDive-ID: 16634

DSM-Number: 11806

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Anaerobiospirillum thomasii A 273/88 is an anaerobe, mesophilic human pathogen that was isolated from human feces.

NCBI tax id

  • NCBI tax id: 179995
  • Matching level: species

strain history

  • @ref: 4495
  • history: <- NCTC <- H. Malnick, A 273/88

doi: 10.13145/bacdive16634.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Succinivibrionaceae
  • genus: Anaerobiospirillum
  • species: Anaerobiospirillum thomasii
  • full scientific name: Anaerobiospirillum thomasii Malnick 1997

@ref: 4495

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Succinivibrionaceae

genus: Anaerobiospirillum

species: Anaerobiospirillum thomasii

full scientific name: Anaerobiospirillum thomasii Malnick 1997

strain designation: A 273/88

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4495
  • name: ANAEROBIOSPIRILLUM THOMASII MEDIUM (DSMZ Medium 800)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/800
  • composition: Name: ANAEROBIOSPIRILLUM THOMASII MEDIUM (DSMZ Medium 800) Composition: 3-Hydroxybenzoic acid Fildes Enrichment 5-Aminovaleric acid Wilkins Chalgrene Anaerobe Broth

culture temp

@refgrowthtypetemperaturerange
4495positivegrowth37mesophilic
57178positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
4495anaerobe
57178anaerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
4495human fecesUnited KingdomGBREurope
57178Human fecesUnited KingdomGBREurope

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_32915.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_259;96_15901;97_19489;98_24343;99_32915&stattab=map
  • Last taxonomy: Anaerobiospirillum thomasii subclade
  • 16S sequence: AJ420985
  • Sequence Identity:
  • Total samples: 5214
  • soil counts: 30
  • aquatic counts: 66
  • animal counts: 5115
  • plant counts: 3

Safety information

risk assessment

  • @ref: 4495
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Anaerobiospirillum thomasii 16S rRNA gene, strain DSM 11806T
  • accession: AJ420985
  • length: 1494
  • database: ena
  • NCBI tax ID: 179995

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerobiospirillum thomasii NCTC12467GCA_900445255contigncbi179995
66792Anaerobiospirillum thomasii strain NCTC12467179995.4wgspatric179995
66792Anaerobiospirillum thomasii NCTC 124672808606510draftimg179995

GC content

  • @ref: 4495
  • GC-content: 44
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes76.096no
gram-positiveno98.291no
anaerobicyes93.475yes
aerobicno94.035yes
halophileno81.798no
spore-formingno97.874no
glucose-utilyes74.904no
flagellatedno63.559no
thermophileno91.202yes
glucose-fermentyes64.462no

External links

@ref: 4495

culture collection no.: DSM 11806, NCTC 12467, CCUG 46380, ATCC 700432

straininfo link

  • @ref: 85655
  • straininfo: 43932

literature

  • topic: Phylogeny
  • Pubmed-ID: 9103625
  • title: Anaerobiospirillum thomasii sp. nov., an anaerobic spiral bacterium isolated from the feces of cats and dogs and from diarrheal feces of humans, and emendation of the genus Anaerobiospirillum.
  • authors: Malnick H
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-2-381
  • year: 1997
  • mesh: Animals, Bacteria, Anaerobic/*classification/genetics/*isolation & purification, Base Composition, Cats, DNA, Bacterial/chemistry/genetics, Diarrhea/microbiology, Dogs, Feces/*microbiology, Humans, Microscopy, Electron, Nucleic Acid Hybridization, Phenotype, Ribitol/metabolism, Species Specificity
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4495Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11806)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11806
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57178Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46380)https://www.ccug.se/strain?id=46380
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85655Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43932.1StrainInfo: A central database for resolving microbial strain identifiers