Anaerobiospirillum thomasii (DSM 11806, NCTC 12467, CCUG 46380)

Name: Anaerobiospirillum thomasii (DSM 11806, NCTC 12467, CCUG 46380)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16634

Type strain

Strain Designation A 273/88

Culture col. no. DSM 11806 NCTC 12467 CCUG 46380 ATCC 700432 A 273/88

NCBI tax ID(s) 179995

Special Collections DSMZ CCUG

History <- NCTC; NCTC 12467 <- H. Malnick, Central Public Health Laboratory, London, UK; A 273/88

Links

Anaerobiospirillum thomasii A 273/88 is an anaerobe human pathogen that was isolated from human feces.

anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43932

ATCC 700432,NCTC 12467,DSM 11806,CCUG 46380

@ref 20215

Last LPSN update 2026-02-09 11:22:01

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Succinivibrionaceae

Genus Anaerobiospirillum

Species Anaerobiospirillum thomasii

Full scientific name Anaerobiospirillum thomasii Malnick 1997

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.983
125439	negative	95.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4495	ANAEROBIOSPIRILLUM THOMASII MEDIUM (DSMZ Medium 800)		Medium recipe at MediaDive	Name: ANAEROBIOSPIRILLUM THOMASII MEDIUM (DSMZ Medium 800) Composition: 3-Hydroxybenzoic acid Fildes Enrichment 5-Aminovaleric acid Wilkins Chalgrene Anaerobe Broth

Culture temp

@ref	Growth	Type	Temperature (°C)
4495	positive	growth	37
57178	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
4495	anaerobe
57178	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		96.142
125439		92.2

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	teichoic acid biosynthesis	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	NAD metabolism	83.33	15 of 18
66794	peptidoglycan biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	threonine metabolism	80	8 of 10
66794	starch degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	phenylalanine metabolism	69.23	9 of 13
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of hexoses	61.11	11 of 18
66794	purine metabolism	60.64	57 of 94
66794	glycogen metabolism	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	alanine metabolism	58.62	17 of 29
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	cysteine metabolism	55.56	10 of 18
66794	vitamin B6 metabolism	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	leucine metabolism	53.85	7 of 13
66794	histidine metabolism	51.72	15 of 29
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	ascorbate metabolism	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	oxidative phosphorylation	49.45	45 of 91
66794	lysine metabolism	47.62	20 of 42
66794	tryptophan metabolism	47.37	18 of 38
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	pentose phosphate pathway	45.45	5 of 11
66794	degradation of sugar acids	44	11 of 25
66794	tyrosine metabolism	42.86	6 of 14
66794	non-pathway related	42.11	16 of 38
66794	lipid metabolism	41.94	13 of 31
66794	hydrogen production	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	urea cycle	38.46	5 of 13
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	heme metabolism	28.57	4 of 14
66794	d-xylose degradation	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4495	human feces	United Kingdom	GBR	Europe
57178	Human feces	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ420985 (>99% sequence identity) for Anaerobiospirillum thomasii subclade from Microbeatlas

Aquatic Samples	66
Soil Samples	30
Animal Samples	5115
Plant Samples	3
Total Samples	5214

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
4495			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51485_H01 assembly for Anaerobiospirillum thomasii NCTC12467	contig	GCA_900445255	179995.4	2808606510	179995	70.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Anaerobiospirillum thomasii 16S rRNA gene, strain DSM 11806T	AJ420985	1494		179995

GC content

@ref	GC-content (mol%)	Method
4495	44	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerobiospirillum thomasii NCTC12467
NCBI: GCA_900445255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.20	no
125439	motility	BacteriaNetⓘ	no	57.30	no
125439	gram_stain	BacteriaNetⓘ	negative	95.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerobiospirillum thomasii strain NCTC12467
PATRIC: 179995.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.98	no
125438	anaerobic	anaerobicⓘ	yes	68.11	no
125438	spore-forming	spore-formingⓘ	no	96.14	no
125438	aerobic	aerobicⓘ	no	93.19	yes
125438	thermophilic	thermophileⓘ	no	90.55	no
125438	flagellated	motile2+ⓘ	yes	57.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerobiospirillum thomasii sp. nov., an anaerobic spiral bacterium isolated from the feces of cats and dogs and from diarrheal feces of humans, and emendation of the genus Anaerobiospirillum.	Malnick H	Int J Syst Bacteriol	10.1099/00207713-47-2-381	1997

References

#4495	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11806
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#57178	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46380
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerobiospirillum thomasii (DSM 11806, NCTC 12467, CCUG 46380)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900445255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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