Archive BacDiveID:10.13145/bacdive16632.20230509.8.1

Strain identifier

BacDive ID: 16632

Type strain:

Species: Thermocatellispora tengchongensis

Strain history: S.-K. Tang YIM 77521.

NCBI tax ID(s): 1073253 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 17767

BacDive-ID: 16632

DSM-Number: 45615

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Thermocatellispora tengchongensis DSM 45615 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sandy soil from a geothermal area.

NCBI tax id

NCBI tax id: 1073253
Matching level: species

strain history

@ref	history
17767	<- S.-K. Tang, YIM; YIM 77521 <- E. Zhou
67770	S.-K. Tang YIM 77521.

doi: 10.13145/bacdive16632.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Streptosporangiaceae
genus: Thermocatellispora
species: Thermocatellispora tengchongensis
full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

@ref: 17767

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Thermocatellispora

species: Thermocatellispora tengchongensis

full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

type strain: yes

Morphology

cell morphology

@ref: 30475
gram stain: positive
motility: no

pigmentation

@ref: 30475
production: yes

multimedia

@ref: 17767
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45615.jpg
caption: Medium 553 37°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
17767	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17767	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://mediadive.dsmz.de/medium/553	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
17767	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
17767	positive	growth	37	mesophilic
30475	positive	growth	28-58
30475	positive	optimum	47.5	thermophilic
67770	positive	growth	37	mesophilic

culture pH

@ref	ability	type	pH
30475	positive	growth	06-08
30475	positive	optimum	7

Physiology and metabolism

oxygen tolerance

@ref: 30475
oxygen tolerance: aerobe

spore formation

@ref: 30475
spore formation: yes

halophily

@ref: 30475
salt: NaCl
growth: positive
tested relation: growth
concentration: 0-2 %

observation

@ref: 67770
observation: quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
30475	22599	arabinose	+	carbon source
30475	28757	fructose	+	carbon source
30475	28260	galactose	+	carbon source
30475	17716	lactose	+	carbon source
30475	17306	maltose	+	carbon source
30475	37684	mannose	+	carbon source
30475	17268	myo-inositol	+	carbon source
30475	17992	sucrose	+	carbon source
30475	17151	xylitol	+	carbon source
30475	18222	xylose	+	carbon source
30475	17632	nitrate	+	reduction

enzymes

@ref	value	activity	ec
30475	catalase	+	1.11.1.6
30475	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
17767	sandy soil from a geothermal area	Yunnan Province, Tengchong, Rehai National Park	China	CHN	Asia
67770	Sandy soil at Rehai National Park	Tengchong, Yunnan Province, south-west China	China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Safety information

risk assessment

@ref: 17767
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 17767
description: Thermocatellispora tengchongensis strain YIM 77521 16S ribosomal RNA gene, partial sequence
accession: JN315666
length: 1526
database: ena
NCBI tax ID: 1073253

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Thermocatellispora tengchongensis DSM 45615	GCA_014202315	scaffold	ncbi	1073253
66792	Thermocatellispora tengchongensis strain DSM 45615	1073253.3	wgs	patric	1073253
66792	Thermocatellispora tengchongensis DSM 45615	2861438687	draft	img	1073253

GC content

@ref	GC-content	method
17767	73.3	high performance liquid chromatography (HPLC)
30475	73.3

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	97.463	yes
gram-positive	yes	89.799	no
anaerobic	no	99.124	yes
aerobic	yes	94.471	no
halophile	no	90.33	no
spore-forming	yes	95.018	yes
glucose-util	yes	88.696	no
thermophile	no	98.778	no
motile	no	88.468	yes
glucose-ferment	no	92.088	no

External links

@ref: 17767

culture collection no.: DSM 45615, CCTCC AA 2011013, YIM 77521, JCM 17698

straininfo link

@ref: 85653
straininfo: 400094

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	22140173	Thermocatellispora tengchongensis gen. nov., sp. nov., a new member of the family Streptosporangiaceae.	Zhou EM, Yang LL, Song ZQ, Yu TT, Nie GX, Ming H, Zhou Y, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036897-0	2011	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial, Vitamin K 2/analysis	Genetics
Phylogeny	30444470	Thermocatellispora soli sp. nov., isolated from hot spring soil.	Duangupama T, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003115	2018	Actinobacteria/genetics, Actinomycetales/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hot Springs, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	ID_cross_reference	pubmed
17767	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45615)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-45615
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30475	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	26810	28776041
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
85653	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID400094.1	StrainInfo: A central database for resolving microbial strain identifiers