Strain identifier

BacDive ID: 16632

Type strain: Yes

Species: Thermocatellispora tengchongensis

Strain history: S.-K. Tang YIM 77521.

NCBI tax ID(s): 1073253 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.3 (current version)

General

@ref: 17767

BacDive-ID: 16632

DSM-Number: 45615

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Thermocatellispora tengchongensis DSM 45615 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sandy soil from a geothermal area.

NCBI tax id

  • NCBI tax id: 1073253
  • Matching level: species

strain history

@refhistory
17767<- S.-K. Tang, YIM; YIM 77521 <- E. Zhou
67770S.-K. Tang YIM 77521.

doi: 10.13145/bacdive16632.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Thermocatellispora
  • species: Thermocatellispora tengchongensis
  • full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

@ref: 17767

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Thermocatellispora

species: Thermocatellispora tengchongensis

full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
30475positiveno
125439no93.4
125439positive100

pigmentation

  • @ref: 30475
  • production: yes

multimedia

  • @ref: 17767
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45615.jpg
  • caption: Medium 553 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17767GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17767GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
17767ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperature
17767positivegrowth37
30475positivegrowth28-58
30475positiveoptimum47.5
67770positivegrowth37

culture pH

@refabilitytypepH
30475positivegrowth06-08
30475positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
30475aerobe
125439obligate aerobe99.2

spore formation

@refspore formationconfidence
30475yes
125439yes96.7
125438yes90.594

halophily

  • @ref: 30475
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3047522599arabinose+carbon source
3047528757fructose+carbon source
3047528260galactose+carbon source
3047517716lactose+carbon source
3047517306maltose+carbon source
3047537684mannose+carbon source
3047517268myo-inositol+carbon source
3047517992sucrose+carbon source
3047517151xylitol+carbon source
3047518222xylose+carbon source
3047517632nitrate+reduction

enzymes

@refvalueactivityec
30475catalase+1.11.1.6
30475cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17767sandy soil from a geothermal areaYunnan Province, Tengchong, Rehai National ParkChinaCHNAsia
67770Sandy soil at Rehai National ParkTengchong, Yunnan Province, south-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 17767
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17767
  • description: Thermocatellispora tengchongensis strain YIM 77521 16S ribosomal RNA gene, partial sequence
  • accession: JN315666
  • length: 1526
  • database: nuccore
  • NCBI tax ID: 1073253

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermocatellispora tengchongensis DSM 45615GCA_014202315scaffoldncbi1073253
66792Thermocatellispora tengchongensis strain DSM 456151073253.3wgspatric1073253
66792Thermocatellispora tengchongensis DSM 456152861438687draftimg1073253

GC content

@refGC-contentmethod
1776773.3high performance liquid chromatography (HPLC)
3047573.3

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.2
125439BacteriaNetgram_stainReaction to gram-stainingpositive100
125439BacteriaNetmotilityAbility to perform movementno93.4
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes96.7
125438gram-positivegram-positivePositive reaction to Gram-stainingyes86.572yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.557no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.123yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes90.594yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.346no
125438motile2+flagellatedAbility to perform flagellated movementno88yes

External links

@ref: 17767

culture collection no.: DSM 45615, CCTCC AA 2011013, YIM 77521, JCM 17698

straininfo link

  • @ref: 85653
  • straininfo: 400094

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22140173Thermocatellispora tengchongensis gen. nov., sp. nov., a new member of the family Streptosporangiaceae.Zhou EM, Yang LL, Song ZQ, Yu TT, Nie GX, Ming H, Zhou Y, Tang SK, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.036897-02011Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial, Vitamin K 2/analysisGenetics
Phylogeny30444470Thermocatellispora soli sp. nov., isolated from hot spring soil.Duangupama T, Pittayakhajonwut P, Thawai CInt J Syst Evol Microbiol10.1099/ijsem.0.0031152018Actinobacteria/genetics, Actinomycetales/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Hot Springs, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17767Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45615)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45615
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30475Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2681028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85653Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400094.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1