Strain identifier

BacDive ID: 166284

Type strain: Yes

Species: Muricauda hymeniacidonis

Strain Designation: 176CP4-71

NCBI tax ID(s): 2517819 (species)

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General

@ref: 68236

BacDive-ID: 166284

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, rod-shaped, colony-forming

description: Muricauda hymeniacidonis 176CP4-71 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sponge .

NCBI tax id

  • NCBI tax id: 2517819
  • Matching level: species

doi: 10.13145/bacdive166284.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda hymeniacidonis
  • full scientific name: Muricauda hymeniacidonis Park 2019

  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda hymeniacidonis

@ref: 68236

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda hymeniacidonis

strain designation: 176CP4-71

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
68236negative1.7-2.5 µm0.4-0.8 µmrod-shapedno
69480no92.167
69480negative98

colony morphology

  • @ref: 68236
  • colony color: orange
  • colony shape: circular
  • medium used: Marine agar (MA)

Culture and growth conditions

culture temp

@refgrowthtypetemperature
68236positivegrowth15-35
68236positiveoptimum30

culture pH

@refabilitytypepHPH range
68236positivegrowth6-8.5alkaliphile
68236positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 68236
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
68236no
69480no92.83

halophily

@refsaltgrowthtested relationconcentration
68236NaClpositivegrowth1-8 %(w/v)
68236NaClpositiveoptimum3 %(w/v)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68236casein-hydrolysis
68236dna-hydrolysis16991
68236starch-hydrolysis28017
68236tween 60-hydrolysis53425
68236cellulose-hydrolysis62968
68236maltose+assimilation17306
68236nitrate-reduction17632
68236D-mannitol-assimilation16899
68236adipate-assimilation17128
68236citrate-assimilation16947
68236phenylacetate-assimilation18401
68236hexanoate-assimilation17120
68236L-histidine-assimilation15971
682363-hydroxybutyrate-assimilation37054
682364-hydroxybenzoate-assimilation17879
68236L-rhamnose-assimilation62345
68236itaconate-assimilation17240
68236suberate-assimilation76282
68236malonate-assimilation15792
68236lactate-assimilation24996
68236L-alanine-assimilation16977
682365-dehydro-D-gluconate-assimilation58143

metabolite production

  • @ref: 68236
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68236cytochrome oxidase+1.9.3.1
68236catalase+1.11.1.6
68236alkaline phosphatase+3.1.3.1
68236esterase (C 4)+
68236esterase Lipase (C 8)+
68236leucine arylamidase+3.4.11.1
68236trypsin+3.4.21.4
68236naphthol-AS-BI-phosphohydrolase+
68236alpha-glucosidase+3.2.1.20
68236beta-glucosidase+3.2.1.21
68236N-acetyl-beta-glucosaminidase+3.2.1.52
68236arginine dihydrolase-3.5.3.6
68236urease-3.5.1.5
68236beta-glucuronidase-3.2.1.31
68236alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68236C16:00.6
    68236C15:0 iso36.6
    68236C15:0 iso 3OH4.9
    68236C15:1 iso G22.3
    68236C16:0 iso 3OH1.1
    68236C17:0 iso 3OH22.1
    68236C15:0 anteiso1.4
    68236C16:1 w7c/C16:1 w6c8.8
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • incubation temperature: 30
  • incubation time: 2
  • system: MIS MIDI
  • instrument: 6890, Hewlett Packard
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 68236
  • sample type: sponge (Hymeniacidon sinapium)
  • geographic location: Cheongpo beach, Taean-gun, Chungcheongnam-do
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 36.6333
  • longitude: 126.299
  • enrichment culture: MA
  • enrichment culture duration: 1 week
  • enrichment culture temperature: 30

Sequence information

16S sequences

  • @ref: 68236
  • description: Muricauda hymeniacidonis strain 176CP4-71 16S ribosomal RNA gene, partial sequence
  • accession: MK040414
  • length: 1494
  • database: nuccore
  • NCBI tax ID: 2517819

Genome sequences

  • @ref: 68236
  • description: Allomuricauda hymeniacidonis 176CP4-71
  • accession: GCA_004296335
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2517819

GC content

  • @ref: 68236
  • GC-content: 41.6
  • method: genome sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno98yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.179yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes85.688no
69480spore-formingspore-formingAbility to form endo- or exosporesno92.83yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.531yes
69480flagellatedmotile2+Ability to perform flagellated movementno92.167no

External links

@ref: 68236

culture collection no.: KACC 19889, LMG 31033

literature

  • topic: Phylogeny
  • Pubmed-ID: 31644422
  • title: Muricauda hymeniacidonis sp. nov., isolated from sponge of Hymeniacidon sinapium.
  • authors: Park JS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003683
  • year: 2019
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68236Jin-Sook ParkMuricauda hymeniacidonis sp. nov., isolated from sponge of Hymeniacidon sinapium10.1099/ijsem.0.003683IJSEM 69: 3800-3805 2019
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes