General

@ref: 67770

BacDive-ID: 164867

keywords: genome sequence, 16S sequence, Archaea

description: Thermococcus indicus JCM 39077 is an archaeon that was isolated from Deep-sea hydrothermal vent area in the Central Indian Ocean redge.

NCBI tax id

• NCBI tax id: 2586643
• Matching level: species

strain history

• @ref: 67770
• history: J.-A. Yang; Korea Inst. of Ocean Sci. & Technol. South Korea; IOH1.

doi: 10.13145/bacdive164867.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Thermococci
• order: Thermococcales
• family: Thermococcaceae
• genus: Thermococcus
• species: Thermococcus indicus
• full scientific name: Thermococcus indicus Lim et al. 2021

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Thermococci

order: Thermococcales

family: Thermococcaceae

genus: Thermococcus

species: Thermococcus indicus

full scientific name: Thermococcus indicus Lim et al.

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 80

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Deep-sea hydrothermal vent (Onnuri Vent Field) area in the Central Indian Ocean redge

Sequence information

16S sequences

• @ref: 67770
• description: Thermococcus indicus 16S ribosomal RNA gene, partial sequence
• accession: MN065571
• length: 1414
• database: nuccore
• NCBI tax ID: 2586643

Genome sequences

• @ref: 67770
• description: Thermococcus indicus IOH1
• accession: GCA_006274605
• assembly level: complete
• database: ncbi
• NCBI tax ID: 2586643

GC content

• @ref: 67770
• GC-content: 54.9
• method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 39077, KCTC 15844

literature

• topic: Phylogeny
• Pubmed-ID: 32239454
• title: Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri Vent Field of the Central Indian Ocean ridge.
• authors: Lim JK, Kim YJ, Yang JA, Namirimu T, Yang SH, Park MJ, Kwon YM, Lee HS, Kang SG, Lee JH, Kwon KK
• journal: J Microbiol
• DOI: 10.1007/s12275-020-9424-9
• year: 2020
• mesh: Base Composition, DNA, Archaeal/genetics, Ferric Compounds/metabolism, Geologic Sediments/*microbiology, Indian Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Thermococcus/*classification/isolation & purification
• topic2: Metabolism

Reference