Strain identifier

BacDive ID: 16476

Type strain: Yes

Species: Streptomyces hyderabadensis

Strain Designation: FH 8121, OU-40

Strain history: PCM 2692 <-- T. V. K. Reddy OU-40.

NCBI tax ID(s): 598549 (species)

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General

@ref: 18155

BacDive-ID: 16476

DSM-Number: 42074

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, ovoid-shaped

description: Streptomyces hyderabadensis FH 8121 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from farm soil.

NCBI tax id

  • NCBI tax id: 598549
  • Matching level: species

strain history

@refhistory
18155<- J. Wink, Sanofi-Aventis Deutschland GmbH; FH 8121 <- JCM <- PCM; PCM 2692 <- T.V.K. Reddy; OU-40
67770PCM 2692 <-- T. V. K. Reddy OU-40.

doi: 10.13145/bacdive16476.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces hyderabadensis
  • full scientific name: Streptomyces hyderabadensis Reddy et al. 2011

@ref: 18155

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces hyderabadensis

full scientific name: Streptomyces hyderabadensis Reddy et al. 2011

strain designation: FH 8121, OU-40

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
29768positiveovoid-shaped
69480no91.551
69480positive100

pigmentation

  • @ref: 29768
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29768positivegrowth20-37
67770positivegrowth28mesophilic

culture pH

  • @ref: 29768
  • ability: positive
  • type: growth
  • pH: 06-11
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 29768
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29768yes
69481yes100
69480yes100

halophily

  • @ref: 29768
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

observation

@refobservation
29768aggregates in chains
67770quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2976822599arabinose+carbon source
2976817057cellobiose+carbon source
2976828260galactose+carbon source
2976817234glucose+carbon source
2976815428glycine+carbon source
2976827570histidine+carbon source
2976817716lactose+carbon source
2976817306maltose+carbon source
2976829864mannitol+carbon source
2976837684mannose+carbon source
2976828044phenylalanine+carbon source
2976826271proline+carbon source
2976816634raffinose+carbon source
2976833942ribose+carbon source
2976817992sucrose+carbon source
2976827082trehalose+carbon source
2976818222xylose+carbon source

enzymes

@refvalueactivityec
29768gelatinase+
29768urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18155farm soilAndhra Pradesh, Hyderabad regionIndiaINDAsia
67770Farm soil from the Hyderabad region of Andhra Pradeshsouthern IndiaIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Field
#Engineered#Food production#Aquaculture

Safety information

risk assessment

  • @ref: 18155
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18155
  • description: Streptomyces hyderabadensis partial 16S rRNA gene, strain OU-40
  • accession: FM998652
  • length: 1402
  • database: ena
  • NCBI tax ID: 598549

Genome sequences

  • @ref: 66792
  • description: Streptomyces hyderabadensis JCM 17657
  • accession: GCA_020404845
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 598549

GC content

@refGC-contentmethod
1815570.2thermal denaturation, midpoint method (Tm)
2976870.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.245no
gram-positiveyes87.79no
anaerobicno98.916no
aerobicyes94.1yes
halophileno89.674no
spore-formingyes95.111yes
motileno94.458no
thermophileno98.789yes
glucose-utilyes89.14no
glucose-fermentno87.842no

External links

@ref: 18155

culture collection no.: DSM 42074, CCTCC AA 209024, JCM 17657, PCM 2692

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20154329Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil.Reddy TVK, Mahmood S, Paris L, Reddy YHK, Wellington EMH, Idris MMInt J Syst Evol Microbiol10.1099/ijs.0.020446-02010Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny24604690Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees.Busarakam K, Bull AT, Girard G, Labeda DP, van Wezel GP, Goodfellow MAntonie Van Leeuwenhoek10.1007/s10482-014-0139-y2014Anti-Bacterial Agents/*metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Macrolides/*metabolism, Microscopy, Electron, Scanning, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Rifamycins/*metabolism, Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18155Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42074)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42074
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29768Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2614828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1