Strain identifier
BacDive ID: 164738
Type strain: 
Species: Haloferax marinisediminis
Strain history: M.-J. Seo; Div. of Bioeng., Incheon Natl. Univ., South Korea; MBLA0077.
NCBI tax ID(s): 2253 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164738
keywords: genome sequence, Archaea, mesophilic, Gram-negative
description: Haloferax marinisediminis JCM 34170 is a mesophilic, Gram-negative archaeon that was isolated from Sea water from Youngheungdo Island.
NCBI tax id
- NCBI tax id: 2253
- Matching level: species
strain history
- @ref: 67770
- history: M.-J. Seo; Div. of Bioeng., Incheon Natl. Univ., South Korea; MBLA0077.
doi: 10.13145/bacdive164738.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Haloferacaceae
- genus: Haloferax
- species: Haloferax marinisediminis
- full scientific name: Haloferax marinisediminis Cho et al. 2021
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Haloferacaceae
genus: Haloferax
species: Haloferax sp.
full scientific name: Haloferax sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.931
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.988 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sea water from Youngheungdo Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
Genome sequences
- @ref: 67770
- description: Haloferax marinisediminis MBLA0077
- accession: GCA_009674585
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2666142
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 67.076 | no |
| flagellated | no | 95.215 | no |
| gram-positive | no | 98.05 | no |
| anaerobic | no | 93.844 | no |
| aerobic | yes | 79.071 | no |
| halophile | yes | 88.868 | no |
| spore-forming | no | 96.31 | no |
| glucose-util | yes | 89.519 | no |
| thermophile | no | 85.791 | yes |
| glucose-ferment | no | 83.636 | no |
External links
@ref: 67770
culture collection no.: JCM 34170
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |