Strain identifier

BacDive ID: 164658

Type strain: Yes

Species: Companilactobacillus zhongbaensis

Strain Designation: M1575

Strain history: LMG 31045 <-- C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; M1575.

NCBI tax ID(s): 2486009 (species)

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General

@ref: 67770

BacDive-ID: 164658

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Companilactobacillus zhongbaensis M1575 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Traditional yogurt in Tibet Autonomous Region.

NCBI tax id

  • NCBI tax id: 2486009
  • Matching level: species

strain history

  • @ref: 67770
  • history: LMG 31045 <-- C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; M1575.

doi: 10.13145/bacdive164658.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus zhongbaensis
  • full scientific name: Companilactobacillus zhongbaensis (Wei and Gu 2019) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus zhongbaensis

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus zhongbaensis

full scientific name: Companilactobacillus zhongbaensis (Wei and Gu 2019) Zheng et al. 2020

strain designation: M1575

type strain: yes

Morphology

cell morphology

  • @ref: 68191
  • gram stain: positive
  • cell length: 2-3 µm
  • cell width: 0.5-1 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 68191
  • colony size: 1 mm
  • colony color: greyish-white
  • colony shape: circular
  • incubation period: 3 days
  • medium used: mMRS

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
68191positivegrowth15-37
68191nogrowth45thermophilic

culture pH

@refabilitytypepH
68191positivegrowth5
68191nogrowth11

Physiology and metabolism

tolerance

  • @ref: 68191
  • compound: tellurite

oxygen tolerance

  • @ref: 68191
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 68191
  • spore formation: no

halophily

  • @ref: 68191
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %(w/v)

observation

  • @ref: 68191
  • observation: usually occur in pairs or in short chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6819117632nitrate-reduction
6819116301nitrite-reduction
68191606565hippurate+hydrolysis
6819117234glucose-builds gas from
6819115361pyruvate-assimilation
6819129016arginine-assimilation
6819130849L-arabinose+builds acid from
6819116988D-ribose+builds acid from
6819112936D-galactose+builds acid from
6819117634D-glucose+builds acid from
6819115824D-fructose+builds acid from
6819116024D-mannose+builds acid from
6819162345L-rhamnose+builds acid from
68191506227N-acetyl-D-glucosamine+builds acid from
6819117306maltose+builds acid from
6819117716lactose+builds acid from
6819128053melibiose+builds acid from
6819127082trehalose+builds acid from
6819118333D-arabitol+builds acid from
6819124265gluconate+builds acid from
6819117754glycerol-builds acid from
6819117113erythritol-builds acid from
6819117108D-arabinose-builds acid from
6819165327D-xylose-builds acid from
6819165328L-xylose-builds acid from
6819115963ribitol-builds acid from
6819174863methyl beta-D-xylopyranoside-builds acid from
6819117266L-sorbose-builds acid from
6819116813galactitol-builds acid from
6819117268myo-inositol-builds acid from
6819116899D-mannitol-builds acid from
6819117924D-sorbitol-builds acid from
6819143943methyl alpha-D-mannoside-builds acid from
68191320061methyl alpha-D-glucopyranoside-builds acid from
6819127613amygdalin-builds acid from
6819118305arbutin-builds acid from
6819117814salicin-builds acid from
6819117057cellobiose-builds acid from
6819117992sucrose-builds acid from
6819115443inulin-builds acid from
681916731melezitose-builds acid from
6819116634raffinose-builds acid from
6819128017starch-builds acid from
6819128087glycogen-builds acid from
6819117151xylitol-builds acid from
6819128066gentiobiose-builds acid from
6819132528turanose-builds acid from
6819162318D-lyxose-builds acid from
6819116443D-tagatose-builds acid from
6819128847D-fucose-builds acid from
6819118287L-fucose-builds acid from
6819118403L-arabitol-builds acid from
68191168082-dehydro-D-gluconate-builds acid from
68191581435-dehydro-D-gluconate-builds acid from
681914853esculin-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6819135581indoleno
6819115688acetoinno
6819116136hydrogen sulfideyes
68191D-lactateyes
68191L-lactateyes

metabolite tests

  • @ref: 68191
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68191urease-3.5.1.5
68191pyrrolidonyl arylamidase-3.4.19.3
68191catalase-1.11.1.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68191C10:00.8
    68191C14:02.5
    68191C16:033.4
    68191C18:1 w9c32
    68191C18:02.9
    68191C19:1 iso I1.8
    68191C16:1 w6c/C16:1 w7c4.7
    68191C18:2 w6,9c / C18:0 anteiso1.5
    68191C19:1 w6c / C19:0 cyclo w10c7.5
    68191C18:1 w6c/C18:1 w7c12
  • type of FA analysis: whole cell analysis
  • incubation medium: mMRS solid medium
  • incubation temperature: 30
  • incubation time: 3
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationenrichment cultureenrichment culture durationenrichment culture temperature
67770Traditional yogurt in Tibet Autonomous RegionChinaCHNAsia
68191traditional yogurtChinaCHNAsiaTibet Autonomous RegionmMRS agar3 days30

taxonmaps

  • @ref: 69479
  • File name: preview.99_81914.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1756;97_2100;98_3278;99_81914&stattab=map
  • Last taxonomy: Companilactobacillus furfuricola
  • 16S sequence: MK110832
  • Sequence Identity:
  • Total samples: 362
  • soil counts: 64
  • aquatic counts: 46
  • animal counts: 248
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 68191
  • description: Lactobacillus sp. strain M1575 16S ribosomal RNA gene, partial sequence
  • accession: MK110832
  • length: 1457
  • database: ena
  • NCBI tax ID: 2486009

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Companilactobacillus zhongbaensis M15752885707605draftimg2486009
68191Companilactobacillus zhongbaensis M1575GCA_003946515contigncbi2486009

GC content

@refGC-contentmethod
6819139.4genome sequence analysis
6777039.4

External links

@ref: 67770

culture collection no.: JCM 33818, CCM 8892, LMG 31045, NCIMB 15149

literature

  • topic: Phylogeny
  • Pubmed-ID: 31339481
  • title: Lactobacillus yilanensis sp. nov., Lactobacillus bayanensis sp. nov., Lactobacillus keshanensis sp. nov., Lactobacillus kedongensis sp. nov., Lactobacillus baiquanensis sp. nov., Lactobacillus jidongensis sp. nov., Lactobacillus hulinensis sp. nov., Lactobacillus mishanensis sp. nov. and Lactobacillus zhongbaensis sp. nov., isolated from Chinese traditional pickle and yogurt.
  • authors: Wei YX, Gu CT
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003609
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Yogurt/*microbiology
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68191Yu Xin Wei and Chun Tao GuLactobacillus yilanensis sp. nov., Lactobacillus bayanensis sp. nov., Lactobacillus keshanensis sp. nov., Lactobacillus kedongensis sp. nov., Lactobacillus baiquanensis sp. nov., Lactobacillus jidongensis sp. nov., Lactobacillus hulinensis sp. nov., Lactobacillus mishanensis sp. nov. and Lactobacillus zhongbaensis sp. nov., isolated from Chinese traditional pickle and yogurt10.1099/ijsem.0.003609IJSEM 69: 3178-3190 2019
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/