Strain identifier

BacDive ID: 164639

Type strain: Yes

Species: Lentzea indica

Strain Designation: PSKA42

Strain history: S. Mandal; Univ. Calcutta, India; PSKA42.

NCBI tax ID(s): 2604800 (species)

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General

@ref: 67770

BacDive-ID: 164639

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Lentzea indica PSKA42 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil from Rangreth.

NCBI tax id

  • NCBI tax id: 2604800
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Mandal; Univ. Calcutta, India; PSKA42.

doi: 10.13145/bacdive164639.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Lentzea
  • species: Lentzea indica
  • full scientific name: Lentzea indica Maiti and Mandal 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudonocardiales

family: Pseudonocardiaceae

genus: Lentzea

species: Lentzea indica

full scientific name: Lentzea indica Maiti and Mandal

strain designation: PSKA42

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
68108positive
69480positive100

colony morphology

  • @ref: 68108
  • colony color: beige to brownish
  • medium used: Benett medium

pigmentation

@refproductioncolorname
68108nomelanoidmelanoid pigment
68108nosoluble pigment

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth28mesophilic
68108positivegrowth20-30
68108positiveoptimum26-30mesophilic

culture pH

@refabilitytypepHPH range
68108positivegrowth6.0-10.0alkaliphile
68108positiveoptimum7

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes100
69481yes90

halophily

  • @ref: 68108
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.0-3.0 %(w/v)

observation

@refobservation
68108Whole cell sugars are mannose, ribose and cell wall contain meso diaminopimelic acid
68108filamentous
68108colour of aerial mycelium ranges from beige to brownish
68108aerial and substrate mycelium has been observed
68108Rod-shaped spore like elements were found

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6810817634D-glucose+carbon source
6810815824D-fructose+carbon source
6810817306maltose+carbon source
6810817716lactose+carbon source
6810817992sucrose+carbon source
6810862345L-rhamnose+carbon source
6810815963ribitol+carbon source
6810816634raffinose+carbon source
6810865327D-xylose+carbon source
6810812936D-galactose+carbon source
6810828053melibiose+carbon source
6810817268myo-inositol+carbon source
6810815361pyruvate+carbon source
6810817196L-asparagine+nitrogen source
6810816977L-alanine+nitrogen source
6810816467L-arginine+nitrogen source
6810817108D-arabinose-assimilation
6810816813galactitol-assimilation
681086731melezitose-assimilation
6810818186tyrosine-degradation
6810817368hypoxanthine-degradation
6810818305arbutin-degradation
6810828017starch-degradation
68108casein+degradation
6810816199urea+degradation
681084853esculin+degradation
681085291gelatin+degradation
6810830849L-arabinose-builds acid from
6810817306maltose-builds acid from
6810829864mannitol-builds acid from
6810837684mannose-builds acid from
6810817057cellobiose-builds acid from
6810816634raffinose-builds acid from
6810817992sucrose-builds acid from
6810817268myo-inositol-builds acid from
6810818222xylose-builds acid from
6810815963ribitol-builds acid from
6810827082trehalose-builds acid from
6810828757fructose-builds acid from
6810828260galactose-builds acid from
6810817234glucose-builds acid from
6810826546rhamnose-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.group IDis sensitivesensitivity conc.
6810818208penicillin gyesyes10 Unit (disc)
68108161680aztreonamyesyes30 µg (disc)
6810848947clavulanic acidyesyes10 µg (disc)10
681082676amoxicillinyesyes20 µg (disc)10
68108209807cefoxitinyesyes30 µg (disc)
681083515cefuroximeyesyes30 µg (disc)
68108474053cefazolinyesyes30 µg (disc)
681083493cefoperazoneyesyes75 µg (disc)
6810828001vancomycinyesyes30 µg (disc)
68108478164cefepimeyesyes30 µg (disc)
68108100246norfloxacinyesyes10 µg (disc)
681083770co-trimoxazoleyesyes25 µg (disc)
68108100241ciprofloxacinyesyes5 µg (disc)
6810863598levofloxacinyesyes5 µg (disc)
6810828368novobiocinyesyes30 µg (disc)
6810828077rifampicinyesyes30 µg (disc)
6810871415nitrofurantoinyesyes30 µg (disc)
6810837943colistinyesyes10 µg (disc)
681088309polymyxin byesyes30 µg (disc)
6810816869oleandomycinyesyes15 µg (disc)
681083745clindamycinyesyes2 µg (disc)
681086472lincomycinyesyes15 µg (disc)
6810828864tobramycinyesyes10 µg (disc)
6810827902tetracyclineyesyes30 µg (disc)
6810817698chloramphenicolyesyes30 µg (disc)
6810817833gentamicinyesyes10 µg (disc)
6810817076streptomycinyesyes25 µg (disc)

metabolite production

  • @ref: 68108
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
68108catalase+1.11.1.6
68108amylase+
68108cellulase+3.2.1.4
68108lipase+
68108caseinase+3.4.21.50
68108gelatinase+
68108phosphatase-
68108urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling datelatitudelongitude
67770Soil from RangrethSrinagar, Jammu and KashmirIndiaINDAsia
68108Rangreth, Srinagar, Jammu and KashmirIndiaINDAsia2013-12-0648.137311.5756

Sequence information

16S sequences

  • @ref: 68108
  • description: Lentzea sp. strain PSKA42 16S ribosomal RNA gene, partial sequence
  • accession: MH299826
  • length: 1453
  • database: ena
  • NCBI tax ID: 2604800

Genome sequences

  • @ref: 67770
  • description: Lentzea indica PSKA42
  • accession: GCA_012184385
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2604800

GC content

@refGC-contentmethod
6810868.33genome sequence analysis
6777068.3genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes90no
motileno91.624no
flagellatedno96.483no
gram-positiveyes88.724yes
anaerobicno99.149no
aerobicyes92.185no
halophileno89.932no
spore-formingyes92.999no
thermophileno98.785no
glucose-utilyes88.065no
glucose-fermentno90.803no

External links

@ref: 67770

culture collection no.: JCM 33729, MCC 4127, MTCC 12936

literature

  • topic: Phylogeny
  • Pubmed-ID: 32699968
  • title: Lentzea indica sp. nov., a novel actinobacteria isolated from Indian Himalayan-soil.
  • authors: Maiti PK, Mandal S
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-020-01449-8
  • year: 2020
  • mesh: Actinobacteria/*classification/growth & development/*isolation & purification, *Bacterial Typing Techniques, Genotyping Techniques, India, Mycelium, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
  • topic2: Phenotype

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68108Pulak Kumar Maiti, Sukhendu MandalLentzea indica sp. nov., a novel actinobacteria isolated from Indian Himalayan-soil10.1007/s10482-020-01449-8Antonie Van Leeuwenhoek 113: 1411-1423 2020
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1