Strain identifier
BacDive ID: 164590
Type strain: 
Species: Aeromicrobium terrae
Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-CFT486.
NCBI tax ID(s): 2498846 (species)
General
@ref: 67770
BacDive-ID: 164590
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Aeromicrobium terrae JCM 33499 is a mesophilic bacterium that was isolated from Rhizosphere soil of a maize field in Yunlin County.
NCBI tax id
- NCBI tax id: 2498846
- Matching level: species
strain history
- @ref: 67770
- history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-CFT486.
doi: 10.13145/bacdive164590.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Aeromicrobium
- species: Aeromicrobium terrae
- full scientific name: Aeromicrobium terrae Lin et al. 2021
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Aeromicrobium
species: Aeromicrobium terrae
full scientific name: Aeromicrobium terrae Lin et al. 2021
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rhizosphere soil (2 mm distance from the root) of a maize field in Yunlin County
- country: Taiwan
- origin.country: TWN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Aeromicrobium sp. CC-CFT486 16S ribosomal RNA gene, partial sequence
- accession: MK335892
- length: 1443
- database: ena
- NCBI tax ID: 2498846
Genome sequences
- @ref: 67770
- description: Aeromicrobium terrae CC-CFT486
- accession: GCA_008039565
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2498846
GC content
- @ref: 67770
- GC-content: 70.6
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 97.986 | no |
| flagellated | no | 98.997 | no |
| gram-positive | yes | 90.419 | no |
| anaerobic | no | 99.284 | no |
| aerobic | yes | 91.733 | no |
| halophile | no | 91.495 | no |
| spore-forming | no | 94.375 | no |
| glucose-util | yes | 82.75 | no |
| thermophile | no | 92.173 | yes |
| glucose-ferment | no | 89.383 | no |
External links
@ref: 67770
culture collection no.: JCM 33499, BCRC 81217
literature
- topic: Phylogeny
- Pubmed-ID: 33400640
- title: Aeromicrobium terrae sp. nov., isolated from a maize field.
- authors: Lin SY, Tsai CF, Hameed A, Young CC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004616
- year: 2021
- mesh: Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Taiwan, Vitamin K 2/analogs & derivatives/chemistry, Zea mays/*microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |