Strain identifier
BacDive ID: 164522
Type strain: 
Species: Patiriisocius marinistellae
Strain history: H. Itoh and K. Kawano; AIST, Japan; KK4.
NCBI tax ID(s): 2494560 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164522
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Patiriisocius marinistellae JCM 33344 is a mesophilic, Gram-negative bacterium that was isolated from Surface of a starfish, Patiria pectinifera.
NCBI tax id
- NCBI tax id: 2494560
- Matching level: species
strain history
- @ref: 67770
- history: H. Itoh and K. Kawano; AIST, Japan; KK4.
doi: 10.13145/bacdive164522.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Patiriisocius
- species: Patiriisocius marinistellae
- full scientific name: Patiriisocius marinistellae Kawano et al. 2020
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Patiriisocius
species: Patiriisocius marinistellae
full scientific name: Patiriisocius marinistellae Kawano et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.986
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.998 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface of a starfish, Patiria pectinifera
- host species: Patiria pectinifera
- geographic location: coast of Hokkaido
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Patiriisocius marinistellae gene for 16S ribosomal RNA, partial sequence
- accession: LC436787
- length: 1477
- database: ena
- NCBI tax ID: 2494560
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ulvibacter sp. KK4 | 2494560.3 | wgs | patric | 2494560 |
| 67770 | Patiriisocius marinistellae KK4 | GCA_009014635 | contig | ncbi | 2494560 |
GC content
- @ref: 67770
- GC-content: 33.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 86.407 | no |
| gram-positive | no | 98.145 | no |
| anaerobic | no | 99.307 | no |
| aerobic | yes | 95.504 | no |
| halophile | yes | 69.1 | no |
| spore-forming | no | 94.743 | no |
| glucose-util | yes | 75.109 | no |
| flagellated | no | 95.377 | no |
| thermophile | no | 99.674 | yes |
| glucose-ferment | no | 92.828 | no |
External links
@ref: 67770
culture collection no.: JCM 33344, KCTC 72225
literature
- topic: Phylogeny
- Pubmed-ID: 32539909
- title: Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.
- authors: Kawano K, Ushijima N, Kihara M, Itoh H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004254
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Starfish/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |