Patiriisocius marinistellae (KCTC 72225, JCM 33344)

Name: Patiriisocius marinistellae (KCTC 72225, JCM 33344)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164522

Type strain

Culture col. no. KCTC 72225 JCM 33344

NCBI tax ID(s) 2494560

Special Collections JCM KCTC

Links

Patiriisocius marinistellae JCM 33344 is a mesophilic prokaryote that was isolated from Surface of a starfish, Patiria pectinifera.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25701

KCTC 72225,JCM 33344

@ref 20215

Last LPSN update 2025-12-16 10:09:29

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Patiriisocius

Species Patiriisocius marinistellae

Full scientific name Patiriisocius marinistellae Kawano et al. 2020

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.5
125438	98.825	negative
125439	98.8	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125438		91.333
125439		92.1

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Surface of a starfish, Patiria pectinifera	Patiria pectinifera	coast of Hokkaido	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM901463v1 assembly for Patiriisocius marinistellae KK4	contig	GCA_009014635	2494560.3	2890600126	2494560	73.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Patiriisocius marinistellae gene for 16S ribosomal RNA, partial sequence	LC436787	1477		2494560

GC content

@ref	GC-content (mol%)	Method
67770	33.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Patiriisocius marinistellae KK4
NCBI: GCA_009014635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.10	no
125439	motility	BacteriaNetⓘ	no	54.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ulvibacter sp. KK4
PATRIC: 2494560.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.83	no
125438	anaerobic	anaerobicⓘ	no	97.50	no
125438	spore-forming	spore-formingⓘ	no	91.33	no
125438	aerobic	aerobicⓘ	yes	86.76	no
125438	thermophilic	thermophileⓘ	no	95.52	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.	Kawano K, Ushijima N, Kihara M, Itoh H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004254	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Patiriisocius marinistellae (KCTC 72225, JCM 33344)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009014635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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