Strain identifier

BacDive ID: 164497

Type strain: No

Species: Chitinophaga solisilvae

Strain Designation: Mgbs1

Strain history: <- Monash University Malaysia, School of Science; Mgbs1 <-

NCBI tax ID(s): 1233460 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 164497

DSM-Number: 108835

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Chitinophaga solisilvae Mgbs1 is a mesophilic bacterium that was isolated from Tropical peat swamp in the Northern regions of the state of Selangor.

NCBI tax id

  • NCBI tax id: 1233460
  • Matching level: species

strain history

@refhistory
67770M. S. Lee; Sch. of Sci., Monash Univ. Malaysia, Malaysia; Mgbs1.
69124<- Monash University Malaysia, School of Science; Mgbs1 <-

doi: 10.13145/bacdive164497.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Chitinophaga
  • species: Chitinophaga solisilvae
  • full scientific name: Chitinophaga solisilvae Ping et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Chitinophaga extrema

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Chitinophagia

order: Chitinophagales

family: Chitinophagaceae

genus: Chitinophaga

species: Chitinophaga extrema

full scientific name: Chitinophaga extrema Goh et al. 2020

strain designation: Mgbs1

type strain: no

Morphology

multimedia

  • @ref: 69124
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_108835.jpg
  • caption: DSM 108835; scale bar represents 5 µm
  • intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

  • @ref: 69124
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
69124positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationlatitudelongitude
67770Tropical peat swamp in the Northern regions of the state of SelangorMalaysiaMYSAsia
69124Sub-surface peat materialMalaysiaMYSAsiaNorth Selangor3.6539101.296

Sequence information

16S sequences

  • @ref: 67770
  • description: Chitinophaga sp. strain Mgbs1 16S ribosomal RNA gene, partial sequence
  • accession: MT363191
  • length: 1532
  • database: ena
  • NCBI tax ID: 1233460

Genome sequences

  • @ref: 67770
  • description: Chitinophaga solisilvae Mgbs1
  • accession: GCA_003994345
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1233460

GC content

@refGC-contentmethod
6777048.5genome sequence analysis
6912448.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.542no
motileno91.542no
flagellatedno97.253no
flagellatedno97.253no
gram-positiveno97.875no
gram-positiveno97.875no
anaerobicno99.242no
anaerobicno99.242no
aerobicyes88.748no
aerobicyes88.748no
halophileno92.868no
halophileno92.868no
spore-formingno88.808no
spore-formingno88.808no
thermophileno99.273no
thermophileno99.273no
glucose-utilyes87.056no
glucose-utilyes87.056no
glucose-fermentno82.78no
glucose-fermentno82.78no

External links

@ref: 67770

culture collection no.: JCM 33276, DSM 108835

straininfo link

  • @ref: 114168
  • straininfo: 400165

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny33146596Chitinophaga extrema sp. nov., isolated from subsurface soil and leaf litter in a tropical peat swamp forest.Goh CBS, Wong LW, Parimannan S, Rajandas H, Loke S, Croft L, Yule CM, Pasbakhsh P, Lee SM, Tan JBLInt J Syst Evol Microbiol10.1099/ijsem.0.0045392020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Gammaproteobacteria/*classification/isolation & purification, Malaysia, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome
Phylogeny34241587Chitinophaga silvatica sp. nov., isolated from forest soil, and reclassification of Chitinophaga extrema as a later heterotypic synonym of Chitinophaga solisilvae.Yao Y, Zhong X, Li H, Fan W, Xiang Q, Huang YInt J Syst Evol Microbiol10.1099/ijsem.0.0048652021Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69124Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108835Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108835)
114168Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400165.1