Chitinophaga solisilvae (DSM 108835, JCM 33276, Mgbs1)

Name: Chitinophaga solisilvae (DSM 108835, JCM 33276, Mgbs1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164497

Type strain

Strain Designation Mgbs1

Culture col. no. DSM 108835 JCM 33276 Mgbs1

NCBI tax ID(s) 1233460

Special Collections DSMZ JCM

History M. S. Lee; Sch. of Sci., Monash Univ. Malaysia, Malaysia; Mgbs1. <- Monash University Malaysia, School of Science; Mgbs1 <-

Links

Chitinophaga solisilvae Mgbs1 is a bacterium that was isolated from Tropical peat swamp in the Northern regions of the state of Selangor.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400165

KCTC 32404,JCM 33276,DSM 108835

@ref 20215

Last LPSN update 2026-02-09 11:39:52

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Chitinophaga

Species Chitinophaga solisilvae

Full scientific name Chitinophaga solisilvae Ping et al. 2020

Synonyms (1)

Chitinophaga extrema

BacDive ID	Other strains from **Chitinophaga solisilvae** (1)	Type strain
170205	C. solisilvae O9, CGMCC 1.12462, KCTC 32404 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.6
125438	negative	92.814

Multimedia

@ref:	69124
multimedia content:	DSM_108835.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_108835.jpg
caption:	DSM 108835; scale bar represents 5 µm
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
69124	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30
69124	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67770	Tropical peat swamp in the Northern regions of the state of Selangor		Malaysia	MYS	Asia
69124	Sub-surface peat material	North Selangor	Malaysia	MYS	Asia	3.6539	101.296 3.6539/101.296

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM399434v2 assembly for Chitinophaga solisilvae Mgbs1	contig	GCA_003994345	2485489.6	2882793406	1233460	47.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Chitinophaga solisilvae strain Mgbs1 16S ribosomal RNA gene, partial sequence	MT363191	1532		1233460

GC content

@ref	GC-content (mol%)	Method
67770	48.5	genome sequence analysis
69124	48.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chitinophaga solisilvae Mgbs1
NCBI: GCA_003994345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	62.90	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chitinophaga solisilvae Mgbs1
NCBI: GCA_003994345.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.81	no
125438	anaerobic	anaerobicⓘ	no	97.38	no
125438	aerobic	aerobicⓘ	yes	87.25	no
125438	spore-forming	spore-formingⓘ	no	80.46	no
125438	thermophilic	thermophileⓘ	no	96.97	yes
125438	flagellated	motile2+ⓘ	no	86.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinophaga silvatica sp. nov., isolated from forest soil, and reclassification of Chitinophaga extrema as a later heterotypic synonym of Chitinophaga solisilvae.	Yao Y, Zhong X, Li H, Fan W, Xiang Q, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004865	2021
Phylogeny	Chitinophaga extrema sp. nov., isolated from subsurface soil and leaf litter in a tropical peat swamp forest.	Goh CBS, Wong LW, Parimannan S, Rajandas H, Loke S, Croft L, Yule CM, Pasbakhsh P, Lee SM, Tan JBL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004539	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69124	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108835
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chitinophaga solisilvae (DSM 108835, JCM 33276, Mgbs1)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003994345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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