Strain identifier
BacDive ID: 164493
Type strain: 
Species: Lacticaseibacillus yichunensis
Strain history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 33-1.
NCBI tax ID(s): 2486015 (species)
General
@ref: 67770
BacDive-ID: 164493
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lacticaseibacillus yichunensis JCM 33272 is a mesophilic bacterium that was isolated from Traditional pickle in Heilongjiang Province.
NCBI tax id
- NCBI tax id: 2486015
- Matching level: species
strain history
- @ref: 67770
- history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 33-1.
doi: 10.13145/bacdive164493.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus yichunensis
- full scientific name: Lacticaseibacillus yichunensis (Long et al. 2020) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus yichunensis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus yichunensis
full scientific name: Lacticaseibacillus yichunensis (Long et al. 2020) Zheng et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Traditional pickle in Heilongjiang Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus sp. strain 33-1 16S ribosomal RNA gene, partial sequence
- accession: MK110845
- length: 1442
- database: ena
- NCBI tax ID: 2486015
Genome sequences
- @ref: 67770
- description: Lacticaseibacillus yichunensis 33-1
- accession: GCA_003946405
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2486015
GC content
- @ref: 67770
- GC-content: 55.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.567 | no |
| flagellated | no | 97.501 | no |
| gram-positive | yes | 94.526 | no |
| anaerobic | no | 96.462 | no |
| aerobic | no | 96.854 | no |
| halophile | yes | 81.881 | no |
| spore-forming | no | 91.527 | no |
| glucose-util | yes | 92.13 | no |
| thermophile | no | 99.306 | yes |
| glucose-ferment | yes | 87.923 | no |
External links
@ref: 67770
culture collection no.: JCM 33272, CCM 8947, CCTCC 2018405, NCIMB 15169
literature
- topic: Phylogeny
- Pubmed-ID: 32101512
- title: Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt.
- authors: Long GY, Wei YX, Tu W, Gu CT
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004060
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Food, Preserved/*microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Yogurt/*microbiology
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |