Lacticaseibacillus yichunensis (NCIMB 15169, CCTCC 2018405, CCM 8947)

Name: Lacticaseibacillus yichunensis (NCIMB 15169, CCTCC 2018405, CCM 8947)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164493

Type strain

Culture col. no. NCIMB 15169 CCTCC 2018405 CCM 8947 JCM 33272

NCBI tax ID(s) 2486015

Special Collections JCM

History C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 33-1.

Links

Lacticaseibacillus yichunensis JCM 33272 is a mesophilic prokaryote that was isolated from Traditional pickle in Heilongjiang Province.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 28381

JCM 33272

@ref 20215

Last LPSN update 2025-12-16 10:09:28

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus yichunensis

Full scientific name Lacticaseibacillus yichunensis (Long et al. 2020) Zheng et al. 2020

Synonyms (1)

Lactobacillus yichunensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	92.064

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Traditional pickle in Heilongjiang Province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM394640v1 assembly for Lacticaseibacillus yichunensis 33-1	contig	GCA_003946405	2486015.3	2886215831	2486015	63.73
124043	ASM4268038v1 assembly for Lacticaseibacillus yichunensis CCM 8947	scaffold	GCA_042680385			2486015	62.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lacticaseibacillus yichunensis strain 33-1 16S ribosomal RNA gene, partial sequence	MK110845	1442		2486015

GC content

@ref	GC-content (mol%)	Method
67770	55.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus yichunensis 33-1
NCBI: GCA_003946405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.80	no
125439	motility	BacteriaNetⓘ	yes	51.50	no
125439	gram_stain	BacteriaNetⓘ	positive	70.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	80.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacticaseibacillus yichunensis 33-1
NCBI: GCA_003946405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.06	no
125438	anaerobic	anaerobicⓘ	no	86.18	no
125438	aerobic	aerobicⓘ	no	92.74	no
125438	spore-forming	spore-formingⓘ	no	82.80	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt.	Long GY, Wei YX, Tu W, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004060	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacticaseibacillus yichunensis (NCIMB 15169, CCTCC 2018405, CCM 8947)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003946405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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