Strain identifier

BacDive ID: 164491

Type strain: Yes

Species: Acetilactobacillus jinshanensis

Strain Designation: HSLZ-75

Strain history: X. Li; Jiangsu Hengshun Vinegar Ind. Co., Ltd., China; HSLZ-75.

NCBI tax ID(s): 1720083 (species)

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General

@ref: 67770

BacDive-ID: 164491

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Acetilactobacillus jinshanensis HSLZ-75 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms irregular colonies and was isolated from Solid-state vinegar culture of Zhenjiang aromatic vinegar.

NCBI tax id

  • NCBI tax id: 1720083
  • Matching level: species

strain history

  • @ref: 67770
  • history: X. Li; Jiangsu Hengshun Vinegar Ind. Co., Ltd., China; HSLZ-75.

doi: 10.13145/bacdive164491.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Acetilactobacillus
  • species: Acetilactobacillus jinshanensis
  • full scientific name: Acetilactobacillus jinshanensis Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus jinshani

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Acetilactobacillus

species: Acetilactobacillus jinshanensis

full scientific name: Acetilactobacillus jinshanensis Zheng et al. 2020

strain designation: HSLZ-75

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
68327positive1-2.8 µm0.5-0.8 µmrod-shapedno
69480positive100
69480no95.845

colony morphology

  • @ref: 68327
  • colony size: 1-2 mm
  • colony color: white
  • colony shape: irregular
  • incubation period: 7 days
  • medium used: modi?ed MRS agar

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth37mesophilic
68327positivegrowth20-40
68327positiveoptimum35mesophilic

culture pH

@refabilitytypepHPH range
68327positivegrowth3-5acidophile
68327positiveoptimum4

Physiology and metabolism

oxygen tolerance

  • @ref: 68327
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
68327no
69480no99.997
69481no100

halophily

@refsaltgrowthtested relationconcentration
68327NaClpositivegrowth0-5 %(w/v)
68327NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 68327
  • observation: occurring singly or in short chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6832717234glucose+builds gas from
6832717113erythritol+carbon source
6832717634D-glucose+carbon source
6832743943methyl alpha-D-mannoside+carbon source
68327320061methyl alpha-D-glucopyranoside+carbon source
6832717814salicin+carbon source
6832717057cellobiose+carbon source
6832717306maltose+carbon source
6832717716lactose+carbon source
6832717151xylitol+carbon source
6832728066gentiobiose+carbon source

enzymes

@refvalueactivityec
68327catalase-1.11.1.6
68327cytochrome oxidase-1.9.3.1
68327lipase (C 14)-
68327trypsin-3.4.21.4
68327chymotrypsin-3.4.4.5
68327alpha-galactosidase-3.2.1.22
68327beta-galactosidase-3.2.1.23
68327beta-glucuronidase-3.2.1.31
68327alpha-glucosidase-3.2.1.20
68327beta-glucosidase-3.2.1.21
68327N-acetyl-beta-glucosaminidase-3.2.1.52
68327beta-mannosidase-3.2.1.25
68327beta-D-fucosidase-3.2.1.38
68327urease-3.5.1.5
68327cystine arylamidase+/-3.4.11.3
68327naphthol-AS-BI-phosphohydrolase+/-
68327acid phosphatase+3.1.3.2
68327leucine arylamidase+3.4.11.1
68327valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68327C16:032.2
    68327C18:1 w9c22.2
    68327C19:0 cyclo w8c10.9
    68327C18:1 w7c/C18:1 w6c12.2
  • type of FA analysis: whole cell analysis
  • incubation medium: modified MRS agar
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA 6.1
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation procedure
67770Solid-state vinegar culture of Zhenjiang aromatic vinegarJiangsu ProvinceChinaCHNAsia
68327solid-state vinegar cultureZhenjiang, Jiangsu provinceChinaCHNAsia32.1039119.471modified MRS agarsupplemented with 2% acetic acid7 days35anaerobic conditions

taxonmaps

  • @ref: 69479
  • File name: preview.99_106084.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9838;96_42647;97_54553;98_72162;99_106084&stattab=map
  • Last taxonomy: Acetilactobacillus jinshanensis subclade
  • 16S sequence: KT783533
  • Sequence Identity:
  • Total samples: 2668
  • soil counts: 808
  • aquatic counts: 282
  • animal counts: 1450
  • plant counts: 128

Sequence information

16S sequences

  • @ref: 68327
  • description: Lactobacillus jinshani 16S ribosomal RNA gene, partial sequence
  • accession: KT783533
  • length: 1419
  • database: ena
  • NCBI tax ID: 1720083

Genome sequences

  • @ref: 68327
  • description: Acetilactobacillus jinshanensis HSLZ-75
  • accession: GCA_004359375
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1720083

GC content

@refGC-contentmethod
6832739.7genome sequence analysis
6777041.7genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno97.51yes
flagellatedno99.105yes
gram-positiveyes93.071yes
anaerobicno66.47no
aerobicno97.05no
halophileyes83.346yes
spore-formingno98.04no
glucose-utilyes88.301yes
thermophileno98.983yes
glucose-fermentyes86.387no

External links

@ref: 67770

culture collection no.: JCM 33270, CICC 6269

literature

  • topic: Phylogeny
  • Pubmed-ID: 31407135
  • title: Lactobacillus jinshani sp. nov., isolated from solid-state vinegar culture of Zhenjiang aromatic vinegar.
  • authors: Yu Y, Li X, Zhang J, Chai LJ, Lu ZM, Xu ZH
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-019-01316-1
  • year: 2019
  • mesh: *Acetic Acid, Amino Acids, Diamino/metabolism, Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Lactobacillus/classification/*genetics, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68327Yongjian Yu, Xin Li, Junhong Zhang, Li-Juan Chai, Zhen-Ming Lu & Zheng-Hong XuLactobacillus jinshani sp. nov., isolated from solid-state vinegar culture of Zhenjiang aromatic vinegar10.1007/s10482-019-01316-1Antonie Van Leeuwenhoek 113: 43-54 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1