Strain identifier
BacDive ID: 164436
Type strain: 
Species: Marinobacter salinexigens
Strain history: M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; ZYF650.
NCBI tax ID(s): 2919747 (species)
General
@ref: 67770
BacDive-ID: 164436
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Marinobacter salinexigens JCM 33013 is a mesophilic bacterium that was isolated from Seawater at a depth of 9600 m of the Mariana Trench.
NCBI tax id
- NCBI tax id: 2919747
- Matching level: species
strain history
- @ref: 67770
- history: M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; ZYF650.
doi: 10.13145/bacdive164436.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter salinexigens
- full scientific name: Marinobacter salinexigens Ahmad et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter salinexigens
full scientific name: Marinobacter salinexigens Ahmad et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seawater at a depth of 9600 m of the Mariana Trench
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Marinobacter sp. strain ZYF650 16S ribosomal RNA gene, partial sequence | MH012052 | 1501 | ena | 50741 |
| 67770 | Marinobacter sp. ZYF650 16S ribosomal RNA gene, partial sequence | MN325154 | 1501 | ena | 2604327 |
Genome sequences
- @ref: 67770
- description: Marinobacter salinexigens ZYF650
- accession: GCA_008370345
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2919747
GC content
- @ref: 67770
- GC-content: 55.6
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.245 | no |
| flagellated | yes | 90.016 | no |
| gram-positive | no | 98.746 | no |
| anaerobic | no | 97.84 | no |
| aerobic | yes | 88.486 | no |
| halophile | yes | 88.614 | no |
| spore-forming | no | 96.109 | no |
| glucose-util | no | 56.349 | no |
| thermophile | no | 99.41 | yes |
| glucose-ferment | no | 88.973 | no |
External links
@ref: 67770
culture collection no.: JCM 33013, MCCC 1K03552
literature
- topic: Phylogeny
- Pubmed-ID: 32441615
- title: Marinobacter salinexigens sp. nov., a marine bacterium isolated from hadal seawater of the Mariana Trench.
- authors: Ahmad W, Zheng Y, Li Y, Sun W, Hu Y, He X, Liu R, Xue CX, Zhang XH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004236
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinobacter/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |