Marinobacter salinexigens (MCCC 1K03552, JCM 33013)

Name: Marinobacter salinexigens (MCCC 1K03552, JCM 33013)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164436

Type strain

Culture col. no. MCCC 1K03552 JCM 33013

NCBI tax ID(s) 2919747

Special Collections JCM

History M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; ZYF650.

Links

Marinobacter salinexigens JCM 33013 is a bacterium that was isolated from Seawater at a depth of 9600 m of the Mariana Trench.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 391097

JCM 33013

@ref 20215

Last LPSN update 2026-02-09 11:39:51

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter salinexigens

Full scientific name Marinobacter salinexigens Ahmad et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125438	negative	99.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation

67770

Sample typeSeawater at a depth of 9600 m of the Mariana Trench

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM837034v1 assembly for Marinobacter salinexigens ZYF650	contig	GCA_008370345	2919747.3	2902004775	2919747	47.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Marinobacter salinexigens strain ZYF650 16S ribosomal RNA gene, partial sequence	MH012052	1501		50741
67770	Marinobacter salinexigens strain ZYF650 16S ribosomal RNA gene, partial sequence	MN325154	1501		2604327

GC content

@ref	GC-content (mol%)	Method
67770	55.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter salinexigens ZYF650
NCBI: GCA_008370345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	86.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	70.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter salinexigens ZYF650
NCBI: GCA_008370345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	98.71	no
125438	aerobic	aerobicⓘ	yes	82.27	no
125438	spore-forming	spore-formingⓘ	no	89.34	no
125438	thermophilic	thermophileⓘ	no	99.89	no
125438	flagellated	motile2+ⓘ	yes	88.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter salinexigens sp. nov., a marine bacterium isolated from hadal seawater of the Mariana Trench.	Ahmad W, Zheng Y, Li Y, Sun W, Hu Y, He X, Liu R, Xue CX, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004236	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter salinexigens (MCCC 1K03552, JCM 33013)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008370345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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