Strain identifier
BacDive ID: 164305
Type strain: 
Species: Halovulum marinum
Strain history: X. Dai; Inst. of Microbiol., CAS, China; 2CG4.
NCBI tax ID(s): 2662447 (species)
General
@ref: 67770
BacDive-ID: 164305
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Halovulum marinum JCM 32611 is a mesophilic bacterium that was isolated from Deep-sea water from the Northwest Indian Ocean at a depth of 4213 m.
NCBI tax id
- NCBI tax id: 2662447
- Matching level: species
strain history
- @ref: 67770
- history: X. Dai; Inst. of Microbiol., CAS, China; 2CG4.
doi: 10.13145/bacdive164305.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Halovulum
- species: Halovulum marinum
- full scientific name: Halovulum marinum Ruan et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Halovulum
species: Halovulum marinum
full scientific name: Halovulum marinum Ruan et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Deep-sea water from the Northwest Indian Ocean (E 69°20'31.84", N 4°00'10.06") at a depth of 4213 m
- country: Indian Ocean
- latitude: 4.00279
- longitude: 69.3422
Sequence information
16S sequences
- @ref: 67770
- description: Bacteria bacterium strain 2CG4 16S ribosomal RNA gene, partial sequence
- accession: MG333437
- length: 1420
- database: ena
- NCBI tax ID: 1869227
Genome sequences
- @ref: 67770
- description: Halovulum marinum 2CG4
- accession: GCA_009697225
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2662447
GC content
- @ref: 67770
- GC-content: 69.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 55.303 | no |
| flagellated | no | 82.407 | no |
| gram-positive | no | 98.433 | no |
| anaerobic | no | 97.653 | no |
| aerobic | yes | 91.906 | no |
| halophile | no | 55.39 | no |
| spore-forming | no | 95.297 | no |
| glucose-util | yes | 80.95 | no |
| thermophile | no | 93.293 | yes |
| glucose-ferment | no | 89.763 | no |
External links
@ref: 67770
culture collection no.: JCM 32611, CGMCC 1.16468
literature
- topic: Phylogeny
- Pubmed-ID: 32589573
- title: Halovulum marinum sp. nov., isolated from deep-sea water of the Indian Ocean, and emended description of the genus Halovulum.
- authors: Ruan CJ, Wang J, Zheng XW, Song L, Zhu YX, Huang Y, Lu ZJ, Du WB, Huang L, Dai X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004307
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Indian Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |