Halovulum marinum (CGMCC 1.16468, JCM 32611)

Name: Halovulum marinum (CGMCC 1.16468, JCM 32611)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164305

Type strain

Culture col. no. CGMCC 1.16468 JCM 32611

NCBI tax ID(s) 2662447

Special Collections JCM

History X. Dai; Inst. of Microbiol., CAS, China; 2CG4.

Links

Halovulum marinum JCM 32611 is a bacterium that was isolated from Deep-sea water from the Northwest Indian Ocean at a depth of 4213 m.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133679

JCM 32611

@ref 20215

Last LPSN update 2026-02-09 11:39:49

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Halovulum

Species Halovulum marinum

Full scientific name Halovulum marinum Ruan et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.8
125438	negative	96.819

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Latitude	Longitude
67770	Deep-sea water from the Northwest Indian Ocean (E 69°20'31.84", N 4°00'10.06") at a depth of 4213 m	Indian Ocean	4.00279	69.3422 4.00279/69.3422

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM969722v1 assembly for Halovulum marinum 2CG4	scaffold	GCA_009697225	2662447.3	3000562897	2662447	63.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halovulum marinum strain 2CG4 16S ribosomal RNA gene, partial sequence	MG333437	1420		1869227

GC content

@ref	GC-content (mol%)	Method
67770	69.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halovulum marinum 2CG4
NCBI: GCA_009697225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	73.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halovulum marinum 2CG4
NCBI: GCA_009697225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.82	no
125438	anaerobic	anaerobicⓘ	no	92.04	no
125438	aerobic	aerobicⓘ	yes	82.34	no
125438	spore-forming	spore-formingⓘ	no	88.39	no
125438	thermophilic	thermophileⓘ	no	95.89	no
125438	flagellated	motile2+ⓘ	yes	65.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halovulum marinum sp. nov., isolated from deep-sea water of the Indian Ocean, and emended description of the genus Halovulum.	Ruan CJ, Wang J, Zheng XW, Song L, Zhu YX, Huang Y, Lu ZJ, Du WB, Huang L, Dai X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004307	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halovulum marinum (CGMCC 1.16468, JCM 32611)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009697225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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