Strain identifier
BacDive ID: 164042
Type strain: 
Species: Halocatena pleomorpha
Strain history: S. Krishnamurthi; MTCC, India; SPP-AMP-1.
NCBI tax ID(s): 1785090 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164042
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halocatena pleomorpha JCM 31368 is a mesophilic archaeon that was isolated from Salt pan soil in Panaji.
NCBI tax id
- NCBI tax id: 1785090
- Matching level: species
strain history
- @ref: 67770
- history: S. Krishnamurthi; MTCC, India; SPP-AMP-1.
doi: 10.13145/bacdive164042.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halocatena
- species: Halocatena pleomorpha
- full scientific name: Halocatena pleomorpha Verma et al. 2020
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halocatena
species: Halocatena pleomorpha
full scientific name: Halocatena pleomorpha Verma et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Salt pan soil in Panaji
- geographic location: Goa
- country: India
- origin.country: IND
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Halomarina sp. SPP-AMP-1 partial 16S rRNA gene, isolate SPP-AMP-1
- accession: LT009694
- length: 1465
- database: ena
- NCBI tax ID: 1785090
Genome sequences
- @ref: 67770
- description: Halocatena pleomorpha SPP-AMP-1
- accession: GCA_003862495
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1785090
GC content
- @ref: 67770
- GC-content: 57.7
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.204 | no |
| flagellated | no | 97.686 | no |
| gram-positive | no | 96.138 | no |
| anaerobic | no | 96.501 | no |
| aerobic | yes | 86.747 | no |
| halophile | yes | 83.484 | no |
| spore-forming | no | 92.099 | no |
| thermophile | no | 86.473 | no |
| glucose-util | yes | 89.644 | no |
| glucose-ferment | no | 81.391 | no |
External links
@ref: 67770
culture collection no.: JCM 31368, KCTC 4276, MTCC 12579
literature
- topic: Phylogeny
- Pubmed-ID: 32421488
- title: Halocatena pleomorpha gen. nov. sp. nov., an extremely halophilic archaeon of family Halobacteriaceae isolated from saltpan soil.
- authors: Verma A, Pal Y, Kumar P, Krishnamurthi S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004222
- year: 2020
- mesh: Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/isolation & purification, India, Lipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium Chloride, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |